miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 3' -45.6 NC_006146.1 + 168541 0.72 0.991333
Target:  5'- ---cUGGGGGCCUcgggggcGGAGggGGGGGu- -3'
miRNA:   3'- auauAUCCUUGGA-------UCUCuuUCCCUug -5'
29114 3' -45.6 NC_006146.1 + 169473 0.72 0.991333
Target:  5'- ---cUGGGGGCCUcgggggcGGAGggGGGGGu- -3'
miRNA:   3'- auauAUCCUUGGA-------UCUCuuUCCCUug -5'
29114 3' -45.6 NC_006146.1 + 154474 0.72 0.991456
Target:  5'- gGUGUAGGAgcggACCUuaaaGGAGu-AGGGAAUa -3'
miRNA:   3'- aUAUAUCCU----UGGA----UCUCuuUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 31684 0.72 0.99365
Target:  5'- ----cAGGGACC-AGGGAAggguGGGGGACc -3'
miRNA:   3'- auauaUCCUUGGaUCUCUU----UCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 45075 0.71 0.994564
Target:  5'- ----gAGGuGCCUcguGGGGAGAGGGAGg -3'
miRNA:   3'- auauaUCCuUGGA---UCUCUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 53597 0.71 0.996686
Target:  5'- ----aGGGAugCcGGGGAAAGGGcGCg -3'
miRNA:   3'- auauaUCCUugGaUCUCUUUCCCuUG- -5'
29114 3' -45.6 NC_006146.1 + 21582 0.71 0.996686
Target:  5'- -----uGGAGCCUaagggGGGGAucAAGGGGGCa -3'
miRNA:   3'- auauauCCUUGGA-----UCUCU--UUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 40449 0.71 0.997169
Target:  5'- --cGUAGGcgggugcggcaauGGCCUGGuggguGAAGGGGGGCa -3'
miRNA:   3'- auaUAUCC-------------UUGGAUCu----CUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 101690 0.71 0.997219
Target:  5'- ----cGGGcGGCgCUAGAGggGGGGAGa -3'
miRNA:   3'- auauaUCC-UUG-GAUCUCuuUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 18232 0.71 0.997411
Target:  5'- -uUGU-GGAcgGCCUGGGGGAgcucauggacagccuGGGGAGCg -3'
miRNA:   3'- auAUAuCCU--UGGAUCUCUU---------------UCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 141579 0.7 0.998073
Target:  5'- -----cGGGGCCUcggggagggagAGAGGAGGGGGAg -3'
miRNA:   3'- auauauCCUUGGA-----------UCUCUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 156968 0.7 0.998073
Target:  5'- -----cGGGGCCUcggggagggagAGAGGAGGGGGAg -3'
miRNA:   3'- auauauCCUUGGA-----------UCUCUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 150812 0.7 0.998073
Target:  5'- -----cGGGGCCUcggggagggagAGAGGAGGGGGAg -3'
miRNA:   3'- auauauCCUUGGA-----------UCUCUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 153890 0.7 0.998073
Target:  5'- -----cGGGGCCUcggggagggagAGAGGAGGGGGAg -3'
miRNA:   3'- auauauCCUUGGA-----------UCUCUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 147734 0.7 0.998073
Target:  5'- -----cGGGGCCUcggggagggagAGAGGAGGGGGAg -3'
miRNA:   3'- auauauCCUUGGA-----------UCUCUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 144657 0.7 0.998073
Target:  5'- -----cGGGGCCUcggggagggagAGAGGAGGGGGAg -3'
miRNA:   3'- auauauCCUUGGA-----------UCUCUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 41062 0.7 0.998073
Target:  5'- ---cUGGGGGCCUcGGGGugGAGGGAGg -3'
miRNA:   3'- auauAUCCUUGGAuCUCU--UUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 98779 0.7 0.998378
Target:  5'- ----cAGGAauGCCUAGAGAGuagacacAGGGAu- -3'
miRNA:   3'- auauaUCCU--UGGAUCUCUU-------UCCCUug -5'
29114 3' -45.6 NC_006146.1 + 8262 0.69 0.998935
Target:  5'- --aGUAGGG----AGGGGGAGGGAGCg -3'
miRNA:   3'- auaUAUCCUuggaUCUCUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 38052 0.69 0.99908
Target:  5'- --aGUGGGAGCCcAGAGucaggcuguggccaAAGGGGGAg -3'
miRNA:   3'- auaUAUCCUUGGaUCUC--------------UUUCCCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.