miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 3' -45.6 NC_006146.1 + 125716 0.68 0.999836
Target:  5'- ----gAGGAAgau-GAGGAGGGGAGCg -3'
miRNA:   3'- auauaUCCUUggauCUCUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 114970 0.68 0.999836
Target:  5'- ----gAGGAGgC-AGAGAGggcGGGGAACg -3'
miRNA:   3'- auauaUCCUUgGaUCUCUU---UCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 58732 0.67 0.999902
Target:  5'- -----cGGaAACCUGGAGAAgcucuacGGGGAGg -3'
miRNA:   3'- auauauCC-UUGGAUCUCUU-------UCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 12349 0.67 0.999902
Target:  5'- ----cGGGAAgCUGGAGAAGGagccccaGGGACc -3'
miRNA:   3'- auauaUCCUUgGAUCUCUUUC-------CCUUG- -5'
29114 3' -45.6 NC_006146.1 + 30906 0.67 0.999905
Target:  5'- --gAUAGGAACCcacuUGGuGGcccagGGGGGAGCc -3'
miRNA:   3'- auaUAUCCUUGG----AUCuCU-----UUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 60138 0.67 0.999905
Target:  5'- ----gAGGGACCUGGu---GGGGggUg -3'
miRNA:   3'- auauaUCCUUGGAUCucuuUCCCuuG- -5'
29114 3' -45.6 NC_006146.1 + 165746 0.67 0.999928
Target:  5'- ----cGGGggUC-AGGGAGGGGGAu- -3'
miRNA:   3'- auauaUCCuuGGaUCUCUUUCCCUug -5'
29114 3' -45.6 NC_006146.1 + 83764 0.67 0.999928
Target:  5'- --aGUGGGuGGCCUGGuGGGAGGucGCa -3'
miRNA:   3'- auaUAUCC-UUGGAUCuCUUUCCcuUG- -5'
29114 3' -45.6 NC_006146.1 + 166859 0.67 0.999928
Target:  5'- ---uUAGGAAgcCCggcgGGAGGG-GGGAGCg -3'
miRNA:   3'- auauAUCCUU--GGa---UCUCUUuCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 39570 0.67 0.999945
Target:  5'- ----cAGGAuCCUGGAGGgcaugaaGAGGGAc- -3'
miRNA:   3'- auauaUCCUuGGAUCUCU-------UUCCCUug -5'
29114 3' -45.6 NC_006146.1 + 138429 0.67 0.999947
Target:  5'- aGUGgguGGAGCCUAGAGguAGGu--- -3'
miRNA:   3'- aUAUau-CCUUGGAUCUCuuUCCcuug -5'
29114 3' -45.6 NC_006146.1 + 128439 0.67 0.999947
Target:  5'- ----cGGGccgcaGACCgggcGGGAGGGGGAGCg -3'
miRNA:   3'- auauaUCC-----UUGGau--CUCUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 60770 0.67 0.999947
Target:  5'- ----cAGGAGCaaAGGGAAAaguGGGAGCc -3'
miRNA:   3'- auauaUCCUUGgaUCUCUUU---CCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 45769 0.67 0.999961
Target:  5'- gAUAcUGGGAggagACgaAGAGAGucAGGGGACg -3'
miRNA:   3'- aUAU-AUCCU----UGgaUCUCUU--UCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 12700 0.67 0.999961
Target:  5'- ----cAGGAGCCUGGccauuGAcAAGGGggUc -3'
miRNA:   3'- auauaUCCUUGGAUCu----CU-UUCCCuuG- -5'
29114 3' -45.6 NC_006146.1 + 21403 0.67 0.999965
Target:  5'- -cUAUGcGGACCUcAGAGAGggcaggguccccaugGGGGAGCu -3'
miRNA:   3'- auAUAUcCUUGGA-UCUCUU---------------UCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 137406 0.66 0.999971
Target:  5'- ----gAGGGugCUGGGGucccGGGGACc -3'
miRNA:   3'- auauaUCCUugGAUCUCuuu-CCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 147994 0.66 0.999979
Target:  5'- ----gGGGGACUggGGuGGAGGGGGAa -3'
miRNA:   3'- auauaUCCUUGGa-UCuCUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 144916 0.66 0.999979
Target:  5'- ----gGGGGACUggGGuGGAGGGGGAa -3'
miRNA:   3'- auauaUCCUUGGa-UCuCUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 141838 0.66 0.999979
Target:  5'- ----gGGGGACUggGGuGGAGGGGGAa -3'
miRNA:   3'- auauaUCCUUGGa-UCuCUUUCCCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.