miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 3' -45.6 NC_006146.1 + 27 0.66 0.999992
Target:  5'- ----gAGGGGCCgGGAuGGAuguuGGGGGACu -3'
miRNA:   3'- auauaUCCUUGGaUCU-CUU----UCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 350 0.66 0.999992
Target:  5'- ----cGGGAGC--AGAGGGAGGGcGGCg -3'
miRNA:   3'- auauaUCCUUGgaUCUCUUUCCC-UUG- -5'
29114 3' -45.6 NC_006146.1 + 1281 0.66 0.999992
Target:  5'- ----cGGGAGC--AGAGGGAGGGcGGCg -3'
miRNA:   3'- auauaUCCUUGgaUCUCUUUCCC-UUG- -5'
29114 3' -45.6 NC_006146.1 + 2213 0.66 0.999992
Target:  5'- ----cGGGAGC--AGAGGGAGGGcGGCg -3'
miRNA:   3'- auauaUCCUUGgaUCUCUUUCCC-UUG- -5'
29114 3' -45.6 NC_006146.1 + 3145 0.66 0.999992
Target:  5'- ----cGGGAGC--AGAGGGAGGGcGGCg -3'
miRNA:   3'- auauaUCCUUGgaUCUCUUUCCC-UUG- -5'
29114 3' -45.6 NC_006146.1 + 3257 0.68 0.999684
Target:  5'- ----aGGGGACCUGGGGAcggcgcaggccacgaGccGGGGGAUa -3'
miRNA:   3'- auauaUCCUUGGAUCUCU---------------U--UCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 6224 0.69 0.999558
Target:  5'- --gGUAGGggUCUgAGAaaagcGAAAGGGAAa -3'
miRNA:   3'- auaUAUCCuuGGA-UCU-----CUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 6959 0.68 0.999836
Target:  5'- ---uUAGGAcauuggcuaGCCUAGAGGuuacgacagAGGGGggUg -3'
miRNA:   3'- auauAUCCU---------UGGAUCUCU---------UUCCCuuG- -5'
29114 3' -45.6 NC_006146.1 + 7912 0.74 0.970404
Target:  5'- ----gAGGAgGCCgaGGAGAAGGGGGACc -3'
miRNA:   3'- auauaUCCU-UGGa-UCUCUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 8262 0.69 0.998935
Target:  5'- --aGUAGGG----AGGGGGAGGGAGCg -3'
miRNA:   3'- auaUAUCCUuggaUCUCUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 8434 0.73 0.981175
Target:  5'- ---cUGGGGACCaGGAGAGcucGGGGGCg -3'
miRNA:   3'- auauAUCCUUGGaUCUCUUu--CCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 11808 0.69 0.999558
Target:  5'- ---cUGGGGAcCCUGcAGGAGGGGAAg -3'
miRNA:   3'- auauAUCCUU-GGAUcUCUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 12349 0.67 0.999902
Target:  5'- ----cGGGAAgCUGGAGAAGGagccccaGGGACc -3'
miRNA:   3'- auauaUCCUUgGAUCUCUUUC-------CCUUG- -5'
29114 3' -45.6 NC_006146.1 + 12700 0.67 0.999961
Target:  5'- ----cAGGAGCCUGGccauuGAcAAGGGggUc -3'
miRNA:   3'- auauaUCCUUGGAUCu----CU-UUCCCuuG- -5'
29114 3' -45.6 NC_006146.1 + 14196 0.66 0.999989
Target:  5'- -----cGGAGCCUGGAc--GGGGAGg -3'
miRNA:   3'- auauauCCUUGGAUCUcuuUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 14848 0.73 0.988702
Target:  5'- -----cGGGGCCgcgGGAGGccGAGGGGGCa -3'
miRNA:   3'- auauauCCUUGGa--UCUCU--UUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 15708 0.66 0.999992
Target:  5'- -----cGGGGCCacUGGccgaGGAGAGGGGGCu -3'
miRNA:   3'- auauauCCUUGG--AUC----UCUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 18232 0.71 0.997411
Target:  5'- -uUGU-GGAcgGCCUGGGGGAgcucauggacagccuGGGGAGCg -3'
miRNA:   3'- auAUAuCCU--UGGAUCUCUU---------------UCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 21403 0.67 0.999965
Target:  5'- -cUAUGcGGACCUcAGAGAGggcaggguccccaugGGGGAGCu -3'
miRNA:   3'- auAUAUcCUUGGA-UCUCUU---------------UCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 21582 0.71 0.996686
Target:  5'- -----uGGAGCCUaagggGGGGAucAAGGGGGCa -3'
miRNA:   3'- auauauCCUUGGA-----UCUCU--UUCCCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.