miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 3' -45.6 NC_006146.1 + 51571 0.66 0.999989
Target:  5'- ---cUGGGcGCCgccgGGAGGggcccGGGGGAGCc -3'
miRNA:   3'- auauAUCCuUGGa---UCUCU-----UUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 53597 0.71 0.996686
Target:  5'- ----aGGGAugCcGGGGAAAGGGcGCg -3'
miRNA:   3'- auauaUCCUugGaUCUCUUUCCCuUG- -5'
29114 3' -45.6 NC_006146.1 + 58732 0.67 0.999902
Target:  5'- -----cGGaAACCUGGAGAAgcucuacGGGGAGg -3'
miRNA:   3'- auauauCC-UUGGAUCUCUU-------UCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 60138 0.67 0.999905
Target:  5'- ----gAGGGACCUGGu---GGGGggUg -3'
miRNA:   3'- auauaUCCUUGGAUCucuuUCCCuuG- -5'
29114 3' -45.6 NC_006146.1 + 60770 0.67 0.999947
Target:  5'- ----cAGGAGCaaAGGGAAAaguGGGAGCc -3'
miRNA:   3'- auauaUCCUUGgaUCUCUUU---CCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 70712 0.68 0.999727
Target:  5'- ----cGGGAGCUcaGGAGGAgcGGGGGGCu -3'
miRNA:   3'- auauaUCCUUGGa-UCUCUU--UCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 83764 0.67 0.999928
Target:  5'- --aGUGGGuGGCCUGGuGGGAGGucGCa -3'
miRNA:   3'- auaUAUCC-UUGGAUCuCUUUCCcuUG- -5'
29114 3' -45.6 NC_006146.1 + 90066 0.75 0.951507
Target:  5'- ----aGGGAGCCUAgGAGGcggugcagGGGGGAGCa -3'
miRNA:   3'- auauaUCCUUGGAU-CUCU--------UUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 91967 0.68 0.999684
Target:  5'- ---uUAGGAGCCUGGGGAGGcaucacaaucacacuGGcGGGCc -3'
miRNA:   3'- auauAUCCUUGGAUCUCUUU---------------CC-CUUG- -5'
29114 3' -45.6 NC_006146.1 + 97846 0.68 0.999788
Target:  5'- -------cGACCUGGAGGAGGGGGc- -3'
miRNA:   3'- auauauccUUGGAUCUCUUUCCCUug -5'
29114 3' -45.6 NC_006146.1 + 98779 0.7 0.998378
Target:  5'- ----cAGGAauGCCUAGAGAGuagacacAGGGAu- -3'
miRNA:   3'- auauaUCCU--UGGAUCUCUU-------UCCCUug -5'
29114 3' -45.6 NC_006146.1 + 101690 0.71 0.997219
Target:  5'- ----cGGGcGGCgCUAGAGggGGGGAGa -3'
miRNA:   3'- auauaUCC-UUG-GAUCUCuuUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 114970 0.68 0.999836
Target:  5'- ----gAGGAGgC-AGAGAGggcGGGGAACg -3'
miRNA:   3'- auauaUCCUUgGaUCUCUU---UCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 115047 0.73 0.983336
Target:  5'- --aGUAGGAGgaggAGGGGAAGGGGGCg -3'
miRNA:   3'- auaUAUCCUUgga-UCUCUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 125716 0.68 0.999836
Target:  5'- ----gAGGAAgau-GAGGAGGGGAGCg -3'
miRNA:   3'- auauaUCCUUggauCUCUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 125949 0.72 0.990155
Target:  5'- -----cGGAGCCaGGAGAAGGGGucugGCg -3'
miRNA:   3'- auauauCCUUGGaUCUCUUUCCCu---UG- -5'
29114 3' -45.6 NC_006146.1 + 128098 0.68 0.999727
Target:  5'- ----gAGGGGCC--GAGgcAGGGGACa -3'
miRNA:   3'- auauaUCCUUGGauCUCuuUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 128439 0.67 0.999947
Target:  5'- ----cGGGccgcaGACCgggcGGGAGGGGGAGCg -3'
miRNA:   3'- auauaUCC-----UUGGau--CUCUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 135971 0.68 0.999652
Target:  5'- ----cGGGGugCUGGGGu-GGGGGAUg -3'
miRNA:   3'- auauaUCCUugGAUCUCuuUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 135997 0.69 0.999444
Target:  5'- ----cAGGcAACCguaAGGGAGGGGGggUa -3'
miRNA:   3'- auauaUCC-UUGGa--UCUCUUUCCCuuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.