miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 3' -45.6 NC_006146.1 + 137047 0.79 0.853841
Target:  5'- --gGUGGGGGCCUGGGGuuccGGGGACc -3'
miRNA:   3'- auaUAUCCUUGGAUCUCuuu-CCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 137234 0.79 0.853841
Target:  5'- --gGUGGGGGCCUGGGGucccGGGGACc -3'
miRNA:   3'- auaUAUCCUUGGAUCUCuuu-CCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 137406 0.66 0.999971
Target:  5'- ----gAGGGugCUGGGGucccGGGGACc -3'
miRNA:   3'- auauaUCCUugGAUCUCuuu-CCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 138429 0.67 0.999947
Target:  5'- aGUGgguGGAGCCUAGAGguAGGu--- -3'
miRNA:   3'- aUAUau-CCUUGGAUCUCuuUCCcuug -5'
29114 3' -45.6 NC_006146.1 + 138683 1.08 0.031026
Target:  5'- gUAUAUAGGAACCUAGAGAAAGGGAACc -3'
miRNA:   3'- -AUAUAUCCUUGGAUCUCUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 141579 0.7 0.998073
Target:  5'- -----cGGGGCCUcggggagggagAGAGGAGGGGGAg -3'
miRNA:   3'- auauauCCUUGGA-----------UCUCUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 141722 0.69 0.999305
Target:  5'- ----gGGGGGCCggggAGGGAGgcGGGGAGg -3'
miRNA:   3'- auauaUCCUUGGa---UCUCUU--UCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 141838 0.66 0.999979
Target:  5'- ----gGGGGACUggGGuGGAGGGGGAa -3'
miRNA:   3'- auauaUCCUUGGa-UCuCUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 142220 0.66 0.999984
Target:  5'- ----gAGGAcGCCUGGAGGcggacccGAGGGGc- -3'
miRNA:   3'- auauaUCCU-UGGAUCUCU-------UUCCCUug -5'
29114 3' -45.6 NC_006146.1 + 143134 0.66 0.999985
Target:  5'- -cUGUAGcccguGACuCUGGAGGAcGGGGACg -3'
miRNA:   3'- auAUAUCc----UUG-GAUCUCUUuCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 144657 0.7 0.998073
Target:  5'- -----cGGGGCCUcggggagggagAGAGGAGGGGGAg -3'
miRNA:   3'- auauauCCUUGGA-----------UCUCUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 144800 0.69 0.999305
Target:  5'- ----gGGGGGCCggggAGGGAGgcGGGGAGg -3'
miRNA:   3'- auauaUCCUUGGa---UCUCUU--UCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 144916 0.66 0.999979
Target:  5'- ----gGGGGACUggGGuGGAGGGGGAa -3'
miRNA:   3'- auauaUCCUUGGa-UCuCUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 145298 0.66 0.999984
Target:  5'- ----gAGGAcGCCUGGAGGcggacccGAGGGGc- -3'
miRNA:   3'- auauaUCCU-UGGAUCUCU-------UUCCCUug -5'
29114 3' -45.6 NC_006146.1 + 146212 0.66 0.999985
Target:  5'- -cUGUAGcccguGACuCUGGAGGAcGGGGACg -3'
miRNA:   3'- auAUAUCc----UUG-GAUCUCUUuCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 147734 0.7 0.998073
Target:  5'- -----cGGGGCCUcggggagggagAGAGGAGGGGGAg -3'
miRNA:   3'- auauauCCUUGGA-----------UCUCUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 147878 0.69 0.999305
Target:  5'- ----gGGGGGCCggggAGGGAGgcGGGGAGg -3'
miRNA:   3'- auauaUCCUUGGa---UCUCUU--UCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 147994 0.66 0.999979
Target:  5'- ----gGGGGACUggGGuGGAGGGGGAa -3'
miRNA:   3'- auauaUCCUUGGa-UCuCUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 148376 0.66 0.999984
Target:  5'- ----gAGGAcGCCUGGAGGcggacccGAGGGGc- -3'
miRNA:   3'- auauaUCCU-UGGAUCUCU-------UUCCCUug -5'
29114 3' -45.6 NC_006146.1 + 149290 0.66 0.999985
Target:  5'- -cUGUAGcccguGACuCUGGAGGAcGGGGACg -3'
miRNA:   3'- auAUAUCc----UUG-GAUCUCUUuCCCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.