miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 3' -45.6 NC_006146.1 + 138683 1.08 0.031026
Target:  5'- gUAUAUAGGAACCUAGAGAAAGGGAACc -3'
miRNA:   3'- -AUAUAUCCUUGGAUCUCUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 6224 0.69 0.999558
Target:  5'- --gGUAGGggUCUgAGAaaagcGAAAGGGAAa -3'
miRNA:   3'- auaUAUCCuuGGA-UCU-----CUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 97846 0.68 0.999788
Target:  5'- -------cGACCUGGAGGAGGGGGc- -3'
miRNA:   3'- auauauccUUGGAUCUCUUUCCCUug -5'
29114 3' -45.6 NC_006146.1 + 27 0.66 0.999992
Target:  5'- ----gAGGGGCCgGGAuGGAuguuGGGGGACu -3'
miRNA:   3'- auauaUCCUUGGaUCU-CUU----UCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 168420 0.74 0.973435
Target:  5'- ----gAGGGuguGCCUggcgGGGGAGAGGGGGCa -3'
miRNA:   3'- auauaUCCU---UGGA----UCUCUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 169352 0.74 0.973435
Target:  5'- ----gAGGGuguGCCUggcgGGGGAGAGGGGGCa -3'
miRNA:   3'- auauaUCCU---UGGA----UCUCUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 125949 0.72 0.990155
Target:  5'- -----cGGAGCCaGGAGAAGGGGucugGCg -3'
miRNA:   3'- auauauCCUUGGaUCUCUUUCCCu---UG- -5'
29114 3' -45.6 NC_006146.1 + 167609 0.72 0.991333
Target:  5'- ---cUGGGGGCCUcgggggcGGAGggGGGGGu- -3'
miRNA:   3'- auauAUCCUUGGA-------UCUCuuUCCCUug -5'
29114 3' -45.6 NC_006146.1 + 170404 0.72 0.991333
Target:  5'- ---cUGGGGGCCUcgggggcGGAGggGGGGGu- -3'
miRNA:   3'- auauAUCCUUGGA-------UCUCuuUCCCUug -5'
29114 3' -45.6 NC_006146.1 + 51551 0.69 0.999444
Target:  5'- --gAUGGGGAUuaCUGGAGAuggguGGGGAGg -3'
miRNA:   3'- auaUAUCCUUG--GAUCUCUu----UCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 45075 0.71 0.994564
Target:  5'- ----gAGGuGCCUcguGGGGAGAGGGAGg -3'
miRNA:   3'- auauaUCCuUGGA---UCUCUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 169473 0.72 0.991333
Target:  5'- ---cUGGGGGCCUcgggggcGGAGggGGGGGu- -3'
miRNA:   3'- auauAUCCUUGGA-------UCUCuuUCCCUug -5'
29114 3' -45.6 NC_006146.1 + 34853 0.92 0.249008
Target:  5'- gUAUAUAGaAACCUAGAGGAAGGGAACc -3'
miRNA:   3'- -AUAUAUCcUUGGAUCUCUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 98779 0.7 0.998378
Target:  5'- ----cAGGAauGCCUAGAGAGuagacacAGGGAu- -3'
miRNA:   3'- auauaUCCU--UGGAUCUCUU-------UCCCUug -5'
29114 3' -45.6 NC_006146.1 + 90066 0.75 0.951507
Target:  5'- ----aGGGAGCCUAgGAGGcggugcagGGGGGAGCa -3'
miRNA:   3'- auauaUCCUUGGAU-CUCU--------UUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 168541 0.72 0.991333
Target:  5'- ---cUGGGGGCCUcgggggcGGAGggGGGGGu- -3'
miRNA:   3'- auauAUCCUUGGA-------UCUCuuUCCCUug -5'
29114 3' -45.6 NC_006146.1 + 38052 0.69 0.99908
Target:  5'- --aGUGGGAGCCcAGAGucaggcuguggccaAAGGGGGAg -3'
miRNA:   3'- auaUAUCCUUGGaUCUC--------------UUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 3257 0.68 0.999684
Target:  5'- ----aGGGGACCUGGGGAcggcgcaggccacgaGccGGGGGAUa -3'
miRNA:   3'- auauaUCCUUGGAUCUCU---------------U--UCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 167488 0.74 0.973435
Target:  5'- ----gAGGGuguGCCUggcgGGGGAGAGGGGGCa -3'
miRNA:   3'- auauaUCCU---UGGA----UCUCUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 170283 0.74 0.973435
Target:  5'- ----gAGGGuguGCCUggcgGGGGAGAGGGGGCa -3'
miRNA:   3'- auauaUCCU---UGGA----UCUCUUUCCCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.