miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 3' -45.6 NC_006146.1 + 101690 0.71 0.997219
Target:  5'- ----cGGGcGGCgCUAGAGggGGGGAGa -3'
miRNA:   3'- auauaUCC-UUG-GAUCUCuuUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 18232 0.71 0.997411
Target:  5'- -uUGU-GGAcgGCCUGGGGGAgcucauggacagccuGGGGAGCg -3'
miRNA:   3'- auAUAuCCU--UGGAUCUCUU---------------UCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 41062 0.7 0.998073
Target:  5'- ---cUGGGGGCCUcGGGGugGAGGGAGg -3'
miRNA:   3'- auauAUCCUUGGAuCUCU--UUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 141579 0.7 0.998073
Target:  5'- -----cGGGGCCUcggggagggagAGAGGAGGGGGAg -3'
miRNA:   3'- auauauCCUUGGA-----------UCUCUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 144657 0.7 0.998073
Target:  5'- -----cGGGGCCUcggggagggagAGAGGAGGGGGAg -3'
miRNA:   3'- auauauCCUUGGA-----------UCUCUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 147734 0.7 0.998073
Target:  5'- -----cGGGGCCUcggggagggagAGAGGAGGGGGAg -3'
miRNA:   3'- auauauCCUUGGA-----------UCUCUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 150812 0.7 0.998073
Target:  5'- -----cGGGGCCUcggggagggagAGAGGAGGGGGAg -3'
miRNA:   3'- auauauCCUUGGA-----------UCUCUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 53597 0.71 0.996686
Target:  5'- ----aGGGAugCcGGGGAAAGGGcGCg -3'
miRNA:   3'- auauaUCCUugGaUCUCUUUCCCuUG- -5'
29114 3' -45.6 NC_006146.1 + 141722 0.69 0.999305
Target:  5'- ----gGGGGGCCggggAGGGAGgcGGGGAGg -3'
miRNA:   3'- auauaUCCUUGGa---UCUCUU--UCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 143134 0.66 0.999985
Target:  5'- -cUGUAGcccguGACuCUGGAGGAcGGGGACg -3'
miRNA:   3'- auAUAUCc----UUG-GAUCUCUUuCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 157610 0.66 0.999984
Target:  5'- ----gAGGAcGCCUGGAGGcggacccGAGGGGc- -3'
miRNA:   3'- auauaUCCU-UGGAUCUCU-------UUCCCUug -5'
29114 3' -45.6 NC_006146.1 + 154532 0.66 0.999984
Target:  5'- ----gAGGAcGCCUGGAGGcggacccGAGGGGc- -3'
miRNA:   3'- auauaUCCU-UGGAUCUCU-------UUCCCUug -5'
29114 3' -45.6 NC_006146.1 + 141838 0.66 0.999979
Target:  5'- ----gGGGGACUggGGuGGAGGGGGAa -3'
miRNA:   3'- auauaUCCUUGGa-UCuCUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 137406 0.66 0.999971
Target:  5'- ----gAGGGugCUGGGGucccGGGGACc -3'
miRNA:   3'- auauaUCCUugGAUCUCuuu-CCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 21403 0.67 0.999965
Target:  5'- -cUAUGcGGACCUcAGAGAGggcaggguccccaugGGGGAGCu -3'
miRNA:   3'- auAUAUcCUUGGA-UCUCUU---------------UCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 12700 0.67 0.999961
Target:  5'- ----cAGGAGCCUGGccauuGAcAAGGGggUc -3'
miRNA:   3'- auauaUCCUUGGAUCu----CU-UUCCCuuG- -5'
29114 3' -45.6 NC_006146.1 + 128439 0.67 0.999947
Target:  5'- ----cGGGccgcaGACCgggcGGGAGGGGGAGCg -3'
miRNA:   3'- auauaUCC-----UUGGau--CUCUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 60770 0.67 0.999947
Target:  5'- ----cAGGAGCaaAGGGAAAaguGGGAGCc -3'
miRNA:   3'- auauaUCCUUGgaUCUCUUU---CCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 83764 0.67 0.999928
Target:  5'- --aGUGGGuGGCCUGGuGGGAGGucGCa -3'
miRNA:   3'- auaUAUCC-UUGGAUCuCUUUCCcuUG- -5'
29114 3' -45.6 NC_006146.1 + 144916 0.66 0.999979
Target:  5'- ----gGGGGACUggGGuGGAGGGGGAa -3'
miRNA:   3'- auauaUCCUUGGa-UCuCUUUCCCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.