miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 3' -45.6 NC_006146.1 + 152368 0.66 0.999985
Target:  5'- -cUGUAGcccguGACuCUGGAGGAcGGGGACg -3'
miRNA:   3'- auAUAUCc----UUG-GAUCUCUUuCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 14196 0.66 0.999989
Target:  5'- -----cGGAGCCUGGAc--GGGGAGg -3'
miRNA:   3'- auauauCCUUGGAUCUcuuUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 51571 0.66 0.999989
Target:  5'- ---cUGGGcGCCgccgGGAGGggcccGGGGGAGCc -3'
miRNA:   3'- auauAUCCuUGGa---UCUCU-----UUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 350 0.66 0.999992
Target:  5'- ----cGGGAGC--AGAGGGAGGGcGGCg -3'
miRNA:   3'- auauaUCCUUGgaUCUCUUUCCC-UUG- -5'
29114 3' -45.6 NC_006146.1 + 141838 0.66 0.999979
Target:  5'- ----gGGGGACUggGGuGGAGGGGGAa -3'
miRNA:   3'- auauaUCCUUGGa-UCuCUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 137406 0.66 0.999971
Target:  5'- ----gAGGGugCUGGGGucccGGGGACc -3'
miRNA:   3'- auauaUCCUugGAUCUCuuu-CCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 21403 0.67 0.999965
Target:  5'- -cUAUGcGGACCUcAGAGAGggcaggguccccaugGGGGAGCu -3'
miRNA:   3'- auAUAUcCUUGGA-UCUCUU---------------UCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 141722 0.69 0.999305
Target:  5'- ----gGGGGGCCggggAGGGAGgcGGGGAGg -3'
miRNA:   3'- auauaUCCUUGGa---UCUCUU--UCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 144800 0.69 0.999305
Target:  5'- ----gGGGGGCCggggAGGGAGgcGGGGAGg -3'
miRNA:   3'- auauaUCCUUGGa---UCUCUU--UCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 147878 0.69 0.999305
Target:  5'- ----gGGGGGCCggggAGGGAGgcGGGGAGg -3'
miRNA:   3'- auauaUCCUUGGa---UCUCUU--UCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 150956 0.69 0.999305
Target:  5'- ----gGGGGGCCggggAGGGAGgcGGGGAGg -3'
miRNA:   3'- auauaUCCUUGGa---UCUCUU--UCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 154034 0.69 0.999305
Target:  5'- ----gGGGGGCCggggAGGGAGgcGGGGAGg -3'
miRNA:   3'- auauaUCCUUGGa---UCUCUU--UCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 157112 0.69 0.999305
Target:  5'- ----gGGGGGCCggggAGGGAGgcGGGGAGg -3'
miRNA:   3'- auauaUCCUUGGa---UCUCUU--UCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 135997 0.69 0.999444
Target:  5'- ----cAGGcAACCguaAGGGAGGGGGggUa -3'
miRNA:   3'- auauaUCC-UUGGa--UCUCUUUCCCuuG- -5'
29114 3' -45.6 NC_006146.1 + 11808 0.69 0.999558
Target:  5'- ---cUGGGGAcCCUGcAGGAGGGGAAg -3'
miRNA:   3'- auauAUCCUU-GGAUcUCUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 26165 0.69 0.999558
Target:  5'- ----gGGGGcuuaagcgGCCUGGAGGggauuaggucgGAGGGGGCg -3'
miRNA:   3'- auauaUCCU--------UGGAUCUCU-----------UUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 83764 0.67 0.999928
Target:  5'- --aGUGGGuGGCCUGGuGGGAGGucGCa -3'
miRNA:   3'- auaUAUCC-UUGGAUCuCUUUCCcuUG- -5'
29114 3' -45.6 NC_006146.1 + 60770 0.67 0.999947
Target:  5'- ----cAGGAGCaaAGGGAAAaguGGGAGCc -3'
miRNA:   3'- auauaUCCUUGgaUCUCUUU---CCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 128439 0.67 0.999947
Target:  5'- ----cGGGccgcaGACCgggcGGGAGGGGGAGCg -3'
miRNA:   3'- auauaUCC-----UUGGau--CUCUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 12700 0.67 0.999961
Target:  5'- ----cAGGAGCCUGGccauuGAcAAGGGggUc -3'
miRNA:   3'- auauaUCCUUGGAUCu----CU-UUCCCuuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.