miRNA display CGI


Results 81 - 100 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 3' -45.6 NC_006146.1 + 147878 0.69 0.999305
Target:  5'- ----gGGGGGCCggggAGGGAGgcGGGGAGg -3'
miRNA:   3'- auauaUCCUUGGa---UCUCUU--UCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 144800 0.69 0.999305
Target:  5'- ----gGGGGGCCggggAGGGAGgcGGGGAGg -3'
miRNA:   3'- auauaUCCUUGGa---UCUCUU--UCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 141722 0.69 0.999305
Target:  5'- ----gGGGGGCCggggAGGGAGgcGGGGAGg -3'
miRNA:   3'- auauaUCCUUGGa---UCUCUU--UCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 8262 0.69 0.998935
Target:  5'- --aGUAGGG----AGGGGGAGGGAGCg -3'
miRNA:   3'- auaUAUCCUuggaUCUCUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 156968 0.7 0.998073
Target:  5'- -----cGGGGCCUcggggagggagAGAGGAGGGGGAg -3'
miRNA:   3'- auauauCCUUGGA-----------UCUCUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 153890 0.7 0.998073
Target:  5'- -----cGGGGCCUcggggagggagAGAGGAGGGGGAg -3'
miRNA:   3'- auauauCCUUGGA-----------UCUCUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 150812 0.7 0.998073
Target:  5'- -----cGGGGCCUcggggagggagAGAGGAGGGGGAg -3'
miRNA:   3'- auauauCCUUGGA-----------UCUCUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 147734 0.7 0.998073
Target:  5'- -----cGGGGCCUcggggagggagAGAGGAGGGGGAg -3'
miRNA:   3'- auauauCCUUGGA-----------UCUCUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 154034 0.69 0.999305
Target:  5'- ----gGGGGGCCggggAGGGAGgcGGGGAGg -3'
miRNA:   3'- auauaUCCUUGGa---UCUCUU--UCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 157112 0.69 0.999305
Target:  5'- ----gGGGGGCCggggAGGGAGgcGGGGAGg -3'
miRNA:   3'- auauaUCCUUGGa---UCUCUU--UCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 135997 0.69 0.999444
Target:  5'- ----cAGGcAACCguaAGGGAGGGGGggUa -3'
miRNA:   3'- auauaUCC-UUGGa--UCUCUUUCCCuuG- -5'
29114 3' -45.6 NC_006146.1 + 125716 0.68 0.999836
Target:  5'- ----gAGGAAgau-GAGGAGGGGAGCg -3'
miRNA:   3'- auauaUCCUUggauCUCUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 128098 0.68 0.999727
Target:  5'- ----gAGGGGCC--GAGgcAGGGGACa -3'
miRNA:   3'- auauaUCCUUGGauCUCuuUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 44046 0.68 0.999727
Target:  5'- ----cGGGAacucgACCUGGAGcguccucAGGGAACg -3'
miRNA:   3'- auauaUCCU-----UGGAUCUCuu-----UCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 70712 0.68 0.999727
Target:  5'- ----cGGGAGCUcaGGAGGAgcGGGGGGCu -3'
miRNA:   3'- auauaUCCUUGGa-UCUCUU--UCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 91967 0.68 0.999684
Target:  5'- ---uUAGGAGCCUGGGGAGGcaucacaaucacacuGGcGGGCc -3'
miRNA:   3'- auauAUCCUUGGAUCUCUUU---------------CC-CUUG- -5'
29114 3' -45.6 NC_006146.1 + 135971 0.68 0.999652
Target:  5'- ----cGGGGugCUGGGGu-GGGGGAUg -3'
miRNA:   3'- auauaUCCUugGAUCUCuuUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 32141 0.68 0.999652
Target:  5'- ----cGGGGugCUGGGGu-GGGGGAUg -3'
miRNA:   3'- auauaUCCUugGAUCUCuuUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 26165 0.69 0.999558
Target:  5'- ----gGGGGcuuaagcgGCCUGGAGGggauuaggucgGAGGGGGCg -3'
miRNA:   3'- auauaUCCU--------UGGAUCUCU-----------UUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 11808 0.69 0.999558
Target:  5'- ---cUGGGGAcCCUGcAGGAGGGGAAg -3'
miRNA:   3'- auauAUCCUU-GGAUcUCUUUCCCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.