Results 41 - 60 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29114 | 3' | -45.6 | NC_006146.1 | + | 51571 | 0.66 | 0.999989 |
Target: 5'- ---cUGGGcGCCgccgGGAGGggcccGGGGGAGCc -3' miRNA: 3'- auauAUCCuUGGa---UCUCU-----UUCCCUUG- -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 350 | 0.66 | 0.999992 |
Target: 5'- ----cGGGAGC--AGAGGGAGGGcGGCg -3' miRNA: 3'- auauaUCCUUGgaUCUCUUUCCC-UUG- -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 1281 | 0.66 | 0.999992 |
Target: 5'- ----cGGGAGC--AGAGGGAGGGcGGCg -3' miRNA: 3'- auauaUCCUUGgaUCUCUUUCCC-UUG- -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 2213 | 0.66 | 0.999992 |
Target: 5'- ----cGGGAGC--AGAGGGAGGGcGGCg -3' miRNA: 3'- auauaUCCUUGgaUCUCUUUCCC-UUG- -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 3145 | 0.66 | 0.999992 |
Target: 5'- ----cGGGAGC--AGAGGGAGGGcGGCg -3' miRNA: 3'- auauaUCCUUGgaUCUCUUUCCC-UUG- -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 154532 | 0.66 | 0.999984 |
Target: 5'- ----gAGGAcGCCUGGAGGcggacccGAGGGGc- -3' miRNA: 3'- auauaUCCU-UGGAUCUCU-------UUCCCUug -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 151454 | 0.66 | 0.999984 |
Target: 5'- ----gAGGAcGCCUGGAGGcggacccGAGGGGc- -3' miRNA: 3'- auauaUCCU-UGGAUCUCU-------UUCCCUug -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 128439 | 0.67 | 0.999947 |
Target: 5'- ----cGGGccgcaGACCgggcGGGAGGGGGAGCg -3' miRNA: 3'- auauaUCC-----UUGGau--CUCUUUCCCUUG- -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 12700 | 0.67 | 0.999961 |
Target: 5'- ----cAGGAGCCUGGccauuGAcAAGGGggUc -3' miRNA: 3'- auauaUCCUUGGAUCu----CU-UUCCCuuG- -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 21403 | 0.67 | 0.999965 |
Target: 5'- -cUAUGcGGACCUcAGAGAGggcaggguccccaugGGGGAGCu -3' miRNA: 3'- auAUAUcCUUGGA-UCUCUU---------------UCCCUUG- -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 137406 | 0.66 | 0.999971 |
Target: 5'- ----gAGGGugCUGGGGucccGGGGACc -3' miRNA: 3'- auauaUCCUugGAUCUCuuu-CCCUUG- -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 141838 | 0.66 | 0.999979 |
Target: 5'- ----gGGGGACUggGGuGGAGGGGGAa -3' miRNA: 3'- auauaUCCUUGGa-UCuCUUUCCCUUg -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 144916 | 0.66 | 0.999979 |
Target: 5'- ----gGGGGACUggGGuGGAGGGGGAa -3' miRNA: 3'- auauaUCCUUGGa-UCuCUUUCCCUUg -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 147994 | 0.66 | 0.999979 |
Target: 5'- ----gGGGGACUggGGuGGAGGGGGAa -3' miRNA: 3'- auauaUCCUUGGa-UCuCUUUCCCUUg -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 151072 | 0.66 | 0.999979 |
Target: 5'- ----gGGGGACUggGGuGGAGGGGGAa -3' miRNA: 3'- auauaUCCUUGGa-UCuCUUUCCCUUg -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 154150 | 0.66 | 0.999979 |
Target: 5'- ----gGGGGACUggGGuGGAGGGGGAa -3' miRNA: 3'- auauaUCCUUGGa-UCuCUUUCCCUUg -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 157228 | 0.66 | 0.999979 |
Target: 5'- ----gGGGGACUggGGuGGAGGGGGAa -3' miRNA: 3'- auauaUCCUUGGa-UCuCUUUCCCUUg -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 142220 | 0.66 | 0.999984 |
Target: 5'- ----gAGGAcGCCUGGAGGcggacccGAGGGGc- -3' miRNA: 3'- auauaUCCU-UGGAUCUCU-------UUCCCUug -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 145298 | 0.66 | 0.999984 |
Target: 5'- ----gAGGAcGCCUGGAGGcggacccGAGGGGc- -3' miRNA: 3'- auauaUCCU-UGGAUCUCU-------UUCCCUug -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 148376 | 0.66 | 0.999984 |
Target: 5'- ----gAGGAcGCCUGGAGGcggacccGAGGGGc- -3' miRNA: 3'- auauaUCCU-UGGAUCUCU-------UUCCCUug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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