miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 3' -45.6 NC_006146.1 + 83764 0.67 0.999928
Target:  5'- --aGUGGGuGGCCUGGuGGGAGGucGCa -3'
miRNA:   3'- auaUAUCC-UUGGAUCuCUUUCCcuUG- -5'
29114 3' -45.6 NC_006146.1 + 60770 0.67 0.999947
Target:  5'- ----cAGGAGCaaAGGGAAAaguGGGAGCc -3'
miRNA:   3'- auauaUCCUUGgaUCUCUUU---CCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 128439 0.67 0.999947
Target:  5'- ----cGGGccgcaGACCgggcGGGAGGGGGAGCg -3'
miRNA:   3'- auauaUCC-----UUGGau--CUCUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 12700 0.67 0.999961
Target:  5'- ----cAGGAGCCUGGccauuGAcAAGGGggUc -3'
miRNA:   3'- auauaUCCUUGGAUCu----CU-UUCCCuuG- -5'
29114 3' -45.6 NC_006146.1 + 21403 0.67 0.999965
Target:  5'- -cUAUGcGGACCUcAGAGAGggcaggguccccaugGGGGAGCu -3'
miRNA:   3'- auAUAUcCUUGGA-UCUCUU---------------UCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 157228 0.66 0.999979
Target:  5'- ----gGGGGACUggGGuGGAGGGGGAa -3'
miRNA:   3'- auauaUCCUUGGa-UCuCUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 154150 0.66 0.999979
Target:  5'- ----gGGGGACUggGGuGGAGGGGGAa -3'
miRNA:   3'- auauaUCCUUGGa-UCuCUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 151072 0.66 0.999979
Target:  5'- ----gGGGGACUggGGuGGAGGGGGAa -3'
miRNA:   3'- auauaUCCUUGGa-UCuCUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 147994 0.66 0.999979
Target:  5'- ----gGGGGACUggGGuGGAGGGGGAa -3'
miRNA:   3'- auauaUCCUUGGa-UCuCUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 144916 0.66 0.999979
Target:  5'- ----gGGGGACUggGGuGGAGGGGGAa -3'
miRNA:   3'- auauaUCCUUGGa-UCuCUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 141838 0.66 0.999979
Target:  5'- ----gGGGGACUggGGuGGAGGGGGAa -3'
miRNA:   3'- auauaUCCUUGGa-UCuCUUUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 137406 0.66 0.999971
Target:  5'- ----gAGGGugCUGGGGucccGGGGACc -3'
miRNA:   3'- auauaUCCUugGAUCUCuuu-CCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 125949 0.72 0.990155
Target:  5'- -----cGGAGCCaGGAGAAGGGGucugGCg -3'
miRNA:   3'- auauauCCUUGGaUCUCUUUCCCu---UG- -5'
29114 3' -45.6 NC_006146.1 + 170283 0.74 0.973435
Target:  5'- ----gAGGGuguGCCUggcgGGGGAGAGGGGGCa -3'
miRNA:   3'- auauaUCCU---UGGA----UCUCUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 169352 0.74 0.973435
Target:  5'- ----gAGGGuguGCCUggcgGGGGAGAGGGGGCa -3'
miRNA:   3'- auauaUCCU---UGGA----UCUCUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 168420 0.74 0.973435
Target:  5'- ----gAGGGuguGCCUggcgGGGGAGAGGGGGCa -3'
miRNA:   3'- auauaUCCU---UGGA----UCUCUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 167488 0.74 0.973435
Target:  5'- ----gAGGGuguGCCUggcgGGGGAGAGGGGGCa -3'
miRNA:   3'- auauaUCCU---UGGA----UCUCUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 90066 0.75 0.951507
Target:  5'- ----aGGGAGCCUAgGAGGcggugcagGGGGGAGCa -3'
miRNA:   3'- auauaUCCUUGGAU-CUCU--------UUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 34853 0.92 0.249008
Target:  5'- gUAUAUAGaAACCUAGAGGAAGGGAACc -3'
miRNA:   3'- -AUAUAUCcUUGGAUCUCUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 27 0.66 0.999992
Target:  5'- ----gAGGGGCCgGGAuGGAuguuGGGGGACu -3'
miRNA:   3'- auauaUCCUUGGaUCU-CUU----UCCCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.