miRNA display CGI


Results 1 - 20 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 5' -64.2 NC_006146.1 + 121370 0.66 0.596656
Target:  5'- ----gCCUCCgCCCCCagaggaGCCCCCggaucaCCCg -3'
miRNA:   3'- auuagGGAGGgGGGGGa-----UGGGGG------GGG- -5'
29114 5' -64.2 NC_006146.1 + 28928 0.66 0.596656
Target:  5'- ---aCCCgagcagCCCCgCCCC-GCCCgCCCg -3'
miRNA:   3'- auuaGGGa-----GGGG-GGGGaUGGGgGGGg -5'
29114 5' -64.2 NC_006146.1 + 101933 0.66 0.596656
Target:  5'- --cUCCCUaucagcggCUCUgCCCUGCCCCCUg- -3'
miRNA:   3'- auuAGGGA--------GGGGgGGGAUGGGGGGgg -5'
29114 5' -64.2 NC_006146.1 + 54133 0.66 0.596656
Target:  5'- aGGUCCguggaguaguagCggCCCCCCgUGCCCUCCUCc -3'
miRNA:   3'- aUUAGG------------GagGGGGGGgAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 34703 0.66 0.596656
Target:  5'- aGGUUCCUacugggguaCCCCCCUAUCCUaCCUCg -3'
miRNA:   3'- aUUAGGGAgg-------GGGGGGAUGGGG-GGGG- -5'
29114 5' -64.2 NC_006146.1 + 136814 0.66 0.596656
Target:  5'- gGGUCgCggCUgCCCCCCgggACCCCcggCCCCg -3'
miRNA:   3'- aUUAGgGa-GG-GGGGGGa--UGGGG---GGGG- -5'
29114 5' -64.2 NC_006146.1 + 138761 0.66 0.593781
Target:  5'- ---gCCCaUCCCCCaCCCcagcACCCCggggugacguggcaCCCCu -3'
miRNA:   3'- auuaGGG-AGGGGG-GGGa---UGGGG--------------GGGG- -5'
29114 5' -64.2 NC_006146.1 + 34931 0.66 0.593781
Target:  5'- ---gCCCaUCCCCCaCCCcagcACCCCggggugacguggcaCCCCu -3'
miRNA:   3'- auuaGGG-AGGGGG-GGGa---UGGGG--------------GGGG- -5'
29114 5' -64.2 NC_006146.1 + 150688 0.66 0.592823
Target:  5'- gAAUCCUgcaccaguacaugCCCagCCUCCUGCgCCCCCg -3'
miRNA:   3'- aUUAGGGa------------GGG--GGGGGAUGgGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 24109 0.66 0.58708
Target:  5'- ---gCCCUCCaggCCCUCCgagGCCCCaggCCUa -3'
miRNA:   3'- auuaGGGAGG---GGGGGGa--UGGGGg--GGG- -5'
29114 5' -64.2 NC_006146.1 + 27187 0.66 0.58708
Target:  5'- ---gCCCUCCaggCCCUCCgagGCCCCaggCCUa -3'
miRNA:   3'- auuaGGGAGG---GGGGGGa--UGGGGg--GGG- -5'
29114 5' -64.2 NC_006146.1 + 127319 0.66 0.58708
Target:  5'- ----gCCUCCCgCCCC-GCUCCCCg- -3'
miRNA:   3'- auuagGGAGGGgGGGGaUGGGGGGgg -5'
29114 5' -64.2 NC_006146.1 + 21031 0.66 0.58708
Target:  5'- ---gCCCUCCaggCCCUCCgagGCCCCaggCCUa -3'
miRNA:   3'- auuaGGGAGG---GGGGGGa--UGGGGg--GGG- -5'
29114 5' -64.2 NC_006146.1 + 14876 0.66 0.58708
Target:  5'- ---gCCCUCCaggCCCUCCgagGCCCCaggCCUa -3'
miRNA:   3'- auuaGGGAGG---GGGGGGa--UGGGGg--GGG- -5'
29114 5' -64.2 NC_006146.1 + 103531 0.66 0.587079
Target:  5'- ---gCCC-CCCUCCCCguacucgugggACCCggaCCCCg -3'
miRNA:   3'- auuaGGGaGGGGGGGGa----------UGGGg--GGGG- -5'
29114 5' -64.2 NC_006146.1 + 136350 0.66 0.587079
Target:  5'- ----aCCUCCCCCUCCUgguuuaACCcuauggaggggaCCCUCCu -3'
miRNA:   3'- auuagGGAGGGGGGGGA------UGG------------GGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 37928 0.66 0.581347
Target:  5'- cGGUCuCCaCCgCCCCCCgaggACCCagagauaauccaccaCCCCCc -3'
miRNA:   3'- aUUAG-GGaGG-GGGGGGa---UGGG---------------GGGGG- -5'
29114 5' -64.2 NC_006146.1 + 114643 0.66 0.577532
Target:  5'- --cUCgCUCCCCgccgaggacggCCCCgccuCCgCCCCCg -3'
miRNA:   3'- auuAGgGAGGGG-----------GGGGau--GGgGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 42706 0.66 0.577532
Target:  5'- ---gCCCggcgCCgcggcgCCCCCCUggGCCgCCUCCCg -3'
miRNA:   3'- auuaGGGa---GG------GGGGGGA--UGG-GGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 44875 0.66 0.577532
Target:  5'- cAGUCCCUCCCggCCCagcagcagaagCCcACCgCCCCa -3'
miRNA:   3'- aUUAGGGAGGG--GGG-----------GGaUGGgGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.