miRNA display CGI


Results 1 - 20 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 5' -64.2 NC_006146.1 + 121370 0.66 0.596656
Target:  5'- ----gCCUCCgCCCCCagaggaGCCCCCggaucaCCCg -3'
miRNA:   3'- auuagGGAGGgGGGGGa-----UGGGGG------GGG- -5'
29114 5' -64.2 NC_006146.1 + 122314 0.66 0.568019
Target:  5'- ---aCCCUUCuggCCUCCCUgACCCCcgaggCCCCg -3'
miRNA:   3'- auuaGGGAGG---GGGGGGA-UGGGG-----GGGG- -5'
29114 5' -64.2 NC_006146.1 + 75581 0.66 0.568019
Target:  5'- aAAUCUCUCCCagaCCCuccgcgCCUACUgCCCCa -3'
miRNA:   3'- aUUAGGGAGGG---GGG------GGAUGGgGGGGg -5'
29114 5' -64.2 NC_006146.1 + 54090 0.66 0.558546
Target:  5'- cGcgCUCUUggaCCCUaaCCUGCuCCCCCCCg -3'
miRNA:   3'- aUuaGGGAGg--GGGG--GGAUG-GGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 5125 0.66 0.549118
Target:  5'- ---cCCCUUCCCUUCCUGCaaccaCCUaCCCa -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGg----GGG-GGG- -5'
29114 5' -64.2 NC_006146.1 + 128350 0.66 0.53974
Target:  5'- gAAUUCagcgCCCCCCC-ACCCCCCg- -3'
miRNA:   3'- aUUAGGgag-GGGGGGGaUGGGGGGgg -5'
29114 5' -64.2 NC_006146.1 + 81212 0.66 0.53974
Target:  5'- -uAUCCCaggCCgUUCCCCggGCCCCUUCCg -3'
miRNA:   3'- auUAGGGa--GG-GGGGGGa-UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 167823 0.66 0.538805
Target:  5'- ---gCCCgCCCCCgggucuuCCCggGCUCCCCCUc -3'
miRNA:   3'- auuaGGGaGGGGG-------GGGa-UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 168755 0.66 0.538805
Target:  5'- ---gCCCgCCCCCgggucuuCCCggGCUCCCCCUc -3'
miRNA:   3'- auuaGGGaGGGGG-------GGGa-UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 119320 0.66 0.568019
Target:  5'- ----gCCUCaguCCCCCCUucggccgcgccGCCUCCCCa -3'
miRNA:   3'- auuagGGAGg--GGGGGGA-----------UGGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 81318 0.66 0.577532
Target:  5'- -----aCUCCCaCCCCCaucggcAUCCCCCUCa -3'
miRNA:   3'- auuaggGAGGG-GGGGGa-----UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 114643 0.66 0.577532
Target:  5'- --cUCgCUCCCCgccgaggacggCCCCgccuCCgCCCCCg -3'
miRNA:   3'- auuAGgGAGGGG-----------GGGGau--GGgGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 136814 0.66 0.596656
Target:  5'- gGGUCgCggCUgCCCCCCgggACCCCcggCCCCg -3'
miRNA:   3'- aUUAGgGa-GG-GGGGGGa--UGGGG---GGGG- -5'
29114 5' -64.2 NC_006146.1 + 136350 0.66 0.587079
Target:  5'- ----aCCUCCCCCUCCUgguuuaACCcuauggaggggaCCCUCCu -3'
miRNA:   3'- auuagGGAGGGGGGGGA------UGG------------GGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 103531 0.66 0.587079
Target:  5'- ---gCCC-CCCUCCCCguacucgugggACCCggaCCCCg -3'
miRNA:   3'- auuaGGGaGGGGGGGGa----------UGGGg--GGGG- -5'
29114 5' -64.2 NC_006146.1 + 37928 0.66 0.581347
Target:  5'- cGGUCuCCaCCgCCCCCCgaggACCCagagauaauccaccaCCCCCc -3'
miRNA:   3'- aUUAG-GGaGG-GGGGGGa---UGGG---------------GGGGG- -5'
29114 5' -64.2 NC_006146.1 + 44875 0.66 0.577532
Target:  5'- cAGUCCCUCCCggCCCagcagcagaagCCcACCgCCCCa -3'
miRNA:   3'- aUUAGGGAGGG--GGG-----------GGaUGGgGGGGg -5'
29114 5' -64.2 NC_006146.1 + 42706 0.66 0.577532
Target:  5'- ---gCCCggcgCCgcggcgCCCCCCUggGCCgCCUCCCg -3'
miRNA:   3'- auuaGGGa---GG------GGGGGGA--UGG-GGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 4912 0.66 0.577532
Target:  5'- -cAUCCCUaCUCUuuggaUCCCUGCUCCUCCUc -3'
miRNA:   3'- auUAGGGA-GGGG-----GGGGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 126883 0.66 0.577532
Target:  5'- ---gCCCUCggCCgCCCCCU-CCCCgCCg -3'
miRNA:   3'- auuaGGGAG--GG-GGGGGAuGGGGgGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.