miRNA display CGI


Results 81 - 100 of 282 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 5' -64.2 NC_006146.1 + 96178 0.67 0.502821
Target:  5'- gGGUCCCUCCagggCCUuucuggCCCUgagcguaaGCCCCCCUg -3'
miRNA:   3'- aUUAGGGAGG----GGG------GGGA--------UGGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 39274 0.67 0.511953
Target:  5'- -uAUCCCggCCacuaccaucaCCCCCaCUACCacagCCCCCa -3'
miRNA:   3'- auUAGGGa-GG----------GGGGG-GAUGGg---GGGGG- -5'
29114 5' -64.2 NC_006146.1 + 168311 0.67 0.511953
Target:  5'- --uUCCCUCUCCCUauucgACgCCCUCCa -3'
miRNA:   3'- auuAGGGAGGGGGGgga--UGgGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 75939 0.67 0.521153
Target:  5'- uUAAUgCCUggcugcacaCCCCCCUCUACCgcagcggccacgUCCCCUg -3'
miRNA:   3'- -AUUAgGGA---------GGGGGGGGAUGG------------GGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 165257 0.67 0.484776
Target:  5'- ---gUgCUCgUCCCCCUGuCCCCCgCCa -3'
miRNA:   3'- auuaGgGAGgGGGGGGAU-GGGGGgGG- -5'
29114 5' -64.2 NC_006146.1 + 134660 0.67 0.493761
Target:  5'- ---gCUCUCCagaagCCgCCCUGCCUCCUCCc -3'
miRNA:   3'- auuaGGGAGGg----GG-GGGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 19479 0.67 0.484776
Target:  5'- --cUCCgCUCCCCUCUgaGCCCCguugaaCCCa -3'
miRNA:   3'- auuAGG-GAGGGGGGGgaUGGGGg-----GGG- -5'
29114 5' -64.2 NC_006146.1 + 78713 0.67 0.506466
Target:  5'- ---gCCCgCCCCCCagcagcagccccaggCCggGCCCgCCCCCc -3'
miRNA:   3'- auuaGGGaGGGGGG---------------GGa-UGGG-GGGGG- -5'
29114 5' -64.2 NC_006146.1 + 13771 0.67 0.511954
Target:  5'- ----aCCUCUCCCCuggCCUGUCCUCCCCn -3'
miRNA:   3'- auuagGGAGGGGGG---GGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 78861 0.67 0.506466
Target:  5'- ---gCCCgCCCCCCagcagcagccccaggCCggGCCCgCCCCCc -3'
miRNA:   3'- auuaGGGaGGGGGG---------------GGa-UGGG-GGGGG- -5'
29114 5' -64.2 NC_006146.1 + 141551 0.67 0.502822
Target:  5'- ----gCCUCaCCCCUCaGCCCCCUCUg -3'
miRNA:   3'- auuagGGAGgGGGGGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 29160 0.67 0.511954
Target:  5'- ----aCCUCUCCCCuggCCUGUCCUCCCCn -3'
miRNA:   3'- auuagGGAGGGGGG---GGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 149484 0.67 0.501912
Target:  5'- -----gCUCCCCCauggggaCCCUGCCCUCUCUg -3'
miRNA:   3'- auuaggGAGGGGG-------GGGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 164817 0.68 0.467046
Target:  5'- --uUUCCUCCgUCUCC-AUCUCCCCCa -3'
miRNA:   3'- auuAGGGAGGgGGGGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 33496 0.68 0.467046
Target:  5'- gUGGUCCCcgggaCCCCagcaCCCUcccgGCCUCCCUCc -3'
miRNA:   3'- -AUUAGGGa----GGGGg---GGGA----UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 1603 0.68 0.467046
Target:  5'- ---gCCCgCCCgaCCCCCcGCCCCgggaCCCCg -3'
miRNA:   3'- auuaGGGaGGG--GGGGGaUGGGG----GGGG- -5'
29114 5' -64.2 NC_006146.1 + 2535 0.68 0.467046
Target:  5'- ---gCCCgCCCgaCCCCCcGCCCCgggaCCCCg -3'
miRNA:   3'- auuaGGGaGGG--GGGGGaUGGGG----GGGG- -5'
29114 5' -64.2 NC_006146.1 + 3467 0.68 0.467046
Target:  5'- ---gCCCgCCCgaCCCCCcGCCCCgggaCCCCg -3'
miRNA:   3'- auuaGGGaGGG--GGGGGaUGGGG----GGGG- -5'
29114 5' -64.2 NC_006146.1 + 4122 0.68 0.467046
Target:  5'- ---gCCCUuuucaaacUCCCCUCCUGgUCCCCUCg -3'
miRNA:   3'- auuaGGGA--------GGGGGGGGAUgGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 75444 0.68 0.47587
Target:  5'- --cUCUCagagCCCCCCuuCCUGCCCUUCUCg -3'
miRNA:   3'- auuAGGGa---GGGGGG--GGAUGGGGGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.