Results 81 - 100 of 282 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29114 | 5' | -64.2 | NC_006146.1 | + | 26002 | 0.72 | 0.255106 |
Target: 5'- cAGUCCC-CCCCCCCCgcuuucgGCCUCUCg- -3' miRNA: 3'- aUUAGGGaGGGGGGGGa------UGGGGGGgg -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 19847 | 0.72 | 0.255106 |
Target: 5'- cAGUCCC-CCCCCCCCgcuuucgGCCUCUCg- -3' miRNA: 3'- aUUAGGGaGGGGGGGGa------UGGGGGGgg -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 16769 | 0.72 | 0.255106 |
Target: 5'- cAGUCCC-CCCCCCCCgcuuucgGCCUCUCg- -3' miRNA: 3'- aUUAGGGaGGGGGGGGa------UGGGGGGgg -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 13691 | 0.72 | 0.255106 |
Target: 5'- cAGUCCC-CCCCCCCCgcuuucgGCCUCUCg- -3' miRNA: 3'- aUUAGGGaGGGGGGGGa------UGGGGGGgg -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 22925 | 0.72 | 0.249415 |
Target: 5'- cAGUCCC-CCCCCCCCgcuuucgGCCUCUcggUCCa -3' miRNA: 3'- aUUAGGGaGGGGGGGGa------UGGGGG---GGG- -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 26383 | 0.72 | 0.249415 |
Target: 5'- --cUCCCUggCCaCUCCCC-ACCCCuCCCCg -3' miRNA: 3'- auuAGGGA--GG-GGGGGGaUGGGG-GGGG- -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 23305 | 0.72 | 0.249415 |
Target: 5'- --cUCCCUggCCaCUCCCC-ACCCCuCCCCg -3' miRNA: 3'- auuAGGGA--GG-GGGGGGaUGGGG-GGGG- -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 20227 | 0.72 | 0.249415 |
Target: 5'- --cUCCCUggCCaCUCCCC-ACCCCuCCCCg -3' miRNA: 3'- auuAGGGA--GG-GGGGGGaUGGGG-GGGG- -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 29080 | 0.72 | 0.255106 |
Target: 5'- cAGUCCC-CCCCCCCCgcuuucgGCCUCUCg- -3' miRNA: 3'- aUUAGGGaGGGGGGGGa------UGGGGGGgg -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 12545 | 0.72 | 0.278939 |
Target: 5'- --nUCCCUCUcuguCCUCCCcGCCUCUCCCa -3' miRNA: 3'- auuAGGGAGG----GGGGGGaUGGGGGGGG- -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 18702 | 0.72 | 0.278939 |
Target: 5'- --nUCCCUCUcuguCCUCCCcGCCUCUCCCa -3' miRNA: 3'- auuAGGGAGG----GGGGGGaUGGGGGGGG- -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 21780 | 0.72 | 0.278939 |
Target: 5'- --nUCCCUCUcuguCCUCCCcGCCUCUCCCa -3' miRNA: 3'- auuAGGGAGG----GGGGGGaUGGGGGGGG- -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 24858 | 0.72 | 0.278939 |
Target: 5'- --nUCCCUCUcuguCCUCCCcGCCUCUCCCa -3' miRNA: 3'- auuAGGGAGG----GGGGGGaUGGGGGGGG- -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 15624 | 0.72 | 0.278939 |
Target: 5'- --nUCCCUCUcuguCCUCCCcGCCUCUCCCa -3' miRNA: 3'- auuAGGGAGG----GGGGGGaUGGGGGGGG- -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 122891 | 0.72 | 0.278939 |
Target: 5'- -cGUgCCUCCCCCgCCaaGCCUCCCgCCa -3' miRNA: 3'- auUAgGGAGGGGG-GGgaUGGGGGG-GG- -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 76999 | 0.71 | 0.291506 |
Target: 5'- ----gCCUCcgugcuggCCCCCCCUGCCgcaaauuccgCCCCCCu -3' miRNA: 3'- auuagGGAG--------GGGGGGGAUGG----------GGGGGG- -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 21315 | 0.71 | 0.297954 |
Target: 5'- ----gCCUCCUCUCCCgccGCCCCUUCCa -3' miRNA: 3'- auuagGGAGGGGGGGGa--UGGGGGGGG- -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 33056 | 0.71 | 0.311179 |
Target: 5'- cAcgCCCaCCCaCCCCgaGCCCCCCUg -3' miRNA: 3'- aUuaGGGaGGG-GGGGgaUGGGGGGGg -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 119043 | 0.71 | 0.315913 |
Target: 5'- -cAUCCCcaUCCCCgggcucgggccaggCCCCgaGCCCCCCuCCa -3' miRNA: 3'- auUAGGG--AGGGG--------------GGGGa-UGGGGGG-GG- -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 373 | 0.71 | 0.317958 |
Target: 5'- cAAUCgCCgcgCCCCCUCagGCCCCgCCCg -3' miRNA: 3'- aUUAG-GGa--GGGGGGGgaUGGGGgGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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