miRNA display CGI


Results 21 - 40 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 5' -64.2 NC_006146.1 + 80704 0.79 0.086668
Target:  5'- --cUCCuCUUCCCCCUCUGCCCCCUgCa -3'
miRNA:   3'- auuAGG-GAGGGGGGGGAUGGGGGGgG- -5'
29114 5' -64.2 NC_006146.1 + 26237 0.78 0.100646
Target:  5'- ----gCCUCCCCCUCCUcucuCCCUCCCCg -3'
miRNA:   3'- auuagGGAGGGGGGGGAu---GGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 29315 0.78 0.100646
Target:  5'- ----gCCUCCCCCUCCUcucuCCCUCCCCg -3'
miRNA:   3'- auuagGGAGGGGGGGGAu---GGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 20081 0.78 0.100646
Target:  5'- ----gCCUCCCCCUCCUcucuCCCUCCCCg -3'
miRNA:   3'- auuagGGAGGGGGGGGAu---GGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 17003 0.78 0.100646
Target:  5'- ----gCCUCCCCCUCCUcucuCCCUCCCCg -3'
miRNA:   3'- auuagGGAGGGGGGGGAu---GGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 13926 0.78 0.100646
Target:  5'- ----gCCUCCCCCUCCUcucuCCCUCCCCg -3'
miRNA:   3'- auuagGGAGGGGGGGGAu---GGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 23159 0.78 0.100646
Target:  5'- ----gCCUCCCCCUCCUcucuCCCUCCCCg -3'
miRNA:   3'- auuagGGAGGGGGGGGAu---GGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 170894 0.77 0.119633
Target:  5'- ---cCCCUCaaCCCCCCCU-CCCCCCUg -3'
miRNA:   3'- auuaGGGAG--GGGGGGGAuGGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 136884 0.76 0.135184
Target:  5'- cAcgCCCgCCUgCCCCgACCCCCCCCc -3'
miRNA:   3'- aUuaGGGaGGGgGGGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 119318 0.76 0.14191
Target:  5'- ---cCCCUCuggCUCCCCCggGCCCCUCCCg -3'
miRNA:   3'- auuaGGGAG---GGGGGGGa-UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 137263 0.76 0.145387
Target:  5'- ---cCCCUCCCUCCCCcACCCCCgUUg -3'
miRNA:   3'- auuaGGGAGGGGGGGGaUGGGGGgGG- -5'
29114 5' -64.2 NC_006146.1 + 12524 0.76 0.145387
Target:  5'- ---cUCCUCUCCUCCCUGCCUUCCCUc -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 5156 0.76 0.145387
Target:  5'- --uUCCCaUCCCCCuCCCUgACCCCCgCUCu -3'
miRNA:   3'- auuAGGG-AGGGGG-GGGA-UGGGGG-GGG- -5'
29114 5' -64.2 NC_006146.1 + 24837 0.76 0.145387
Target:  5'- ---cUCCUCUCCUCCCUGCCUUCCCUc -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 18681 0.76 0.145387
Target:  5'- ---cUCCUCUCCUCCCUGCCUUCCCUc -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 27915 0.76 0.145387
Target:  5'- ---cUCCUCUCCUCCCUGCCUUCCCUc -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 797 0.76 0.145387
Target:  5'- ---cCCCgccggCCCCCCCUgcggcgccgGCCCCUCCCg -3'
miRNA:   3'- auuaGGGa----GGGGGGGGa--------UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 21759 0.76 0.145387
Target:  5'- ---cUCCUCUCCUCCCUGCCUUCCCUc -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 137076 0.76 0.145387
Target:  5'- ---cCCCUCCCUCCCCcACCCCCgUUg -3'
miRNA:   3'- auuaGGGAGGGGGGGGaUGGGGGgGG- -5'
29114 5' -64.2 NC_006146.1 + 15603 0.76 0.145387
Target:  5'- ---cUCCUCUCCUCCCUGCCUUCCCUc -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.