miRNA display CGI


Results 41 - 60 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 5' -64.2 NC_006146.1 + 1431 0.76 0.152575
Target:  5'- ---cCCCUCCgCCCCCgagGCCCCCaggggaggCCCg -3'
miRNA:   3'- auuaGGGAGGgGGGGGa--UGGGGG--------GGG- -5'
29114 5' -64.2 NC_006146.1 + 500 0.76 0.152575
Target:  5'- ---cCCCUCCgCCCCCgagGCCCCCaggggaggCCCg -3'
miRNA:   3'- auuaGGGAGGgGGGGGa--UGGGGG--------GGG- -5'
29114 5' -64.2 NC_006146.1 + 3295 0.76 0.152575
Target:  5'- ---cCCCUCCgCCCCCgagGCCCCCaggggaggCCCg -3'
miRNA:   3'- auuaGGGAGGgGGGGGa--UGGGGG--------GGG- -5'
29114 5' -64.2 NC_006146.1 + 2363 0.76 0.152575
Target:  5'- ---cCCCUCCgCCCCCgagGCCCCCaggggaggCCCg -3'
miRNA:   3'- auuaGGGAGGgGGGGGa--UGGGGG--------GGG- -5'
29114 5' -64.2 NC_006146.1 + 19952 0.76 0.156289
Target:  5'- ----gCCUCCCUCCCg-GCCCCCCUCa -3'
miRNA:   3'- auuagGGAGGGGGGGgaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 80598 0.76 0.156289
Target:  5'- cUAggCCC-CUCCCCUCUGCCCCUUCCu -3'
miRNA:   3'- -AUuaGGGaGGGGGGGGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 61052 0.76 0.156289
Target:  5'- --cUCCCUCCCCUCUauggcacACCaCCCCCCa -3'
miRNA:   3'- auuAGGGAGGGGGGGga-----UGG-GGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 1728 0.75 0.160084
Target:  5'- ---cCCCgccggCCCCCCCUgcaggcgccgGCCCCUCCCg -3'
miRNA:   3'- auuaGGGa----GGGGGGGGa---------UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 137416 0.75 0.160084
Target:  5'- gGGUCCCggggaccacgCCCCUCCCUuCCCgaCCCCCa -3'
miRNA:   3'- aUUAGGGa---------GGGGGGGGAuGGG--GGGGG- -5'
29114 5' -64.2 NC_006146.1 + 3592 0.75 0.160084
Target:  5'- ---cCCCgccggCCCCCCCUgcaggcgccgGCCCCUCCCg -3'
miRNA:   3'- auuaGGGa----GGGGGGGGa---------UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 2660 0.75 0.160084
Target:  5'- ---cCCCgccggCCCCCCCUgcaggcgccgGCCCCUCCCg -3'
miRNA:   3'- auuaGGGa----GGGGGGGGa---------UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 4218 0.75 0.167925
Target:  5'- ---cCCCgUCUCCCCCCUGCCaggccacaccgcUCCCCCu -3'
miRNA:   3'- auuaGGG-AGGGGGGGGAUGG------------GGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 4025 0.75 0.180331
Target:  5'- ---cUCCUCCUCgCCCUccGCUCCCCCCu -3'
miRNA:   3'- auuaGGGAGGGGgGGGA--UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 31264 0.74 0.184644
Target:  5'- ----gCCUCCUCCUCCUcaacacauGCCUCCCCCa -3'
miRNA:   3'- auuagGGAGGGGGGGGA--------UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 611 0.74 0.184644
Target:  5'- ---gCCCUgCCCCCUCU-CCCCCgCCa -3'
miRNA:   3'- auuaGGGAgGGGGGGGAuGGGGGgGG- -5'
29114 5' -64.2 NC_006146.1 + 3406 0.74 0.184644
Target:  5'- ---gCCCUgCCCCCUCU-CCCCCgCCa -3'
miRNA:   3'- auuaGGGAgGGGGGGGAuGGGGGgGG- -5'
29114 5' -64.2 NC_006146.1 + 2474 0.74 0.184644
Target:  5'- ---gCCCUgCCCCCUCU-CCCCCgCCa -3'
miRNA:   3'- auuaGGGAgGGGGGGGAuGGGGGgGG- -5'
29114 5' -64.2 NC_006146.1 + 1542 0.74 0.184644
Target:  5'- ---gCCCUgCCCCCUCU-CCCCCgCCa -3'
miRNA:   3'- auuaGGGAgGGGGGGGAuGGGGGgGG- -5'
29114 5' -64.2 NC_006146.1 + 69211 0.74 0.186394
Target:  5'- --cUCUCUCCCCCCCuCUagcGCCgcccguagcccguuuCCCCCCa -3'
miRNA:   3'- auuAGGGAGGGGGGG-GA---UGG---------------GGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 125549 0.74 0.189047
Target:  5'- ---aCCCUCCUCCCguuggguaCCgGCCUCCCCCg -3'
miRNA:   3'- auuaGGGAGGGGGG--------GGaUGGGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.