miRNA display CGI


Results 61 - 80 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 5' -64.2 NC_006146.1 + 166036 0.74 0.202816
Target:  5'- gGGUgCCUguggcCCCCgCCCCUGCCCCuauuCCCCu -3'
miRNA:   3'- aUUAgGGA-----GGGG-GGGGAUGGGG----GGGG- -5'
29114 5' -64.2 NC_006146.1 + 30832 0.74 0.207595
Target:  5'- ---cCCCUCCaccaCCCCCUguucaACCUCCUCCa -3'
miRNA:   3'- auuaGGGAGGg---GGGGGA-----UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 54524 0.73 0.212471
Target:  5'- --cUCCCUCCUCCUCUucuucuucguUGCCCCUCUCg -3'
miRNA:   3'- auuAGGGAGGGGGGGG----------AUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 127294 0.73 0.212471
Target:  5'- --cUCCCUCUUCCCCCgACCCgaCCCg -3'
miRNA:   3'- auuAGGGAGGGGGGGGaUGGGggGGG- -5'
29114 5' -64.2 NC_006146.1 + 54567 0.73 0.217446
Target:  5'- -cGUCCCUUCgCCgCCUuCCCCCUCCu -3'
miRNA:   3'- auUAGGGAGGgGGgGGAuGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 23417 0.73 0.22252
Target:  5'- aGGUgCCCUCUgagCCCCCUUugCCCCCUg -3'
miRNA:   3'- aUUA-GGGAGG---GGGGGGAugGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 14183 0.73 0.22252
Target:  5'- aGGUgCCCUCUgagCCCCCUUugCCCCCUg -3'
miRNA:   3'- aUUA-GGGAGG---GGGGGGAugGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 17261 0.73 0.22252
Target:  5'- aGGUgCCCUCUgagCCCCCUUugCCCCCUg -3'
miRNA:   3'- aUUA-GGGAGG---GGGGGGAugGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 20339 0.73 0.22252
Target:  5'- aGGUgCCCUCUgagCCCCCUUugCCCCCUg -3'
miRNA:   3'- aUUA-GGGAGG---GGGGGGAugGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 26495 0.73 0.22252
Target:  5'- aGGUgCCCUCUgagCCCCCUUugCCCCCUg -3'
miRNA:   3'- aUUA-GGGAGG---GGGGGGAugGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 29573 0.73 0.22252
Target:  5'- aGGUgCCCUCUgagCCCCCUUugCCCCCUg -3'
miRNA:   3'- aUUA-GGGAGG---GGGGGGAugGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 23924 0.73 0.235108
Target:  5'- uUGcgCCCagCCCCUCCUGCCCCaagggcggcgacuuuCCCCc -3'
miRNA:   3'- -AUuaGGGagGGGGGGGAUGGGG---------------GGGG- -5'
29114 5' -64.2 NC_006146.1 + 55934 0.73 0.238347
Target:  5'- --uUCCC-CgCCCUCUCUGCCUCCUCCa -3'
miRNA:   3'- auuAGGGaG-GGGGGGGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 131040 0.73 0.238347
Target:  5'- ----gCCUCCUCCCCCgggcacacaGCCCCCgCCg -3'
miRNA:   3'- auuagGGAGGGGGGGGa--------UGGGGGgGG- -5'
29114 5' -64.2 NC_006146.1 + 115886 0.73 0.243829
Target:  5'- -cAUCCCgCCCgCCCCC-AUCCCgCCCg -3'
miRNA:   3'- auUAGGGaGGG-GGGGGaUGGGGgGGG- -5'
29114 5' -64.2 NC_006146.1 + 151972 0.73 0.243829
Target:  5'- ---gCCCUUCCCgUCCUcguuACCCCCCaCCa -3'
miRNA:   3'- auuaGGGAGGGGgGGGA----UGGGGGG-GG- -5'
29114 5' -64.2 NC_006146.1 + 14071 0.72 0.249415
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCuCCCCg -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGG-GGGG- -5'
29114 5' -64.2 NC_006146.1 + 23305 0.72 0.249415
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCuCCCCg -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGG-GGGG- -5'
29114 5' -64.2 NC_006146.1 + 20227 0.72 0.249415
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCuCCCCg -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGG-GGGG- -5'
29114 5' -64.2 NC_006146.1 + 17149 0.72 0.249415
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCuCCCCg -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGG-GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.