miRNA display CGI


Results 81 - 100 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 5' -64.2 NC_006146.1 + 20227 0.72 0.249415
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCuCCCCg -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGG-GGGG- -5'
29114 5' -64.2 NC_006146.1 + 17149 0.72 0.249415
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCuCCCCg -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGG-GGGG- -5'
29114 5' -64.2 NC_006146.1 + 14071 0.72 0.249415
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCuCCCCg -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGG-GGGG- -5'
29114 5' -64.2 NC_006146.1 + 13691 0.72 0.255106
Target:  5'- cAGUCCC-CCCCCCCCgcuuucgGCCUCUCg- -3'
miRNA:   3'- aUUAGGGaGGGGGGGGa------UGGGGGGgg -5'
29114 5' -64.2 NC_006146.1 + 16769 0.72 0.255106
Target:  5'- cAGUCCC-CCCCCCCCgcuuucgGCCUCUCg- -3'
miRNA:   3'- aUUAGGGaGGGGGGGGa------UGGGGGGgg -5'
29114 5' -64.2 NC_006146.1 + 19847 0.72 0.255106
Target:  5'- cAGUCCC-CCCCCCCCgcuuucgGCCUCUCg- -3'
miRNA:   3'- aUUAGGGaGGGGGGGGa------UGGGGGGgg -5'
29114 5' -64.2 NC_006146.1 + 26002 0.72 0.255106
Target:  5'- cAGUCCC-CCCCCCCCgcuuucgGCCUCUCg- -3'
miRNA:   3'- aUUAGGGaGGGGGGGGa------UGGGGGGgg -5'
29114 5' -64.2 NC_006146.1 + 29080 0.72 0.255106
Target:  5'- cAGUCCC-CCCCCCCCgcuuucgGCCUCUCg- -3'
miRNA:   3'- aUUAGGGaGGGGGGGGa------UGGGGGGgg -5'
29114 5' -64.2 NC_006146.1 + 27936 0.72 0.255106
Target:  5'- --nUCCCUCUcguCCUCCCcGCCUCUCCCa -3'
miRNA:   3'- auuAGGGAGG---GGGGGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 24858 0.72 0.278939
Target:  5'- --nUCCCUCUcuguCCUCCCcGCCUCUCCCa -3'
miRNA:   3'- auuAGGGAGG----GGGGGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 21780 0.72 0.278939
Target:  5'- --nUCCCUCUcuguCCUCCCcGCCUCUCCCa -3'
miRNA:   3'- auuAGGGAGG----GGGGGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 18702 0.72 0.278939
Target:  5'- --nUCCCUCUcuguCCUCCCcGCCUCUCCCa -3'
miRNA:   3'- auuAGGGAGG----GGGGGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 15624 0.72 0.278939
Target:  5'- --nUCCCUCUcuguCCUCCCcGCCUCUCCCa -3'
miRNA:   3'- auuAGGGAGG----GGGGGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 12545 0.72 0.278939
Target:  5'- --nUCCCUCUcuguCCUCCCcGCCUCUCCCa -3'
miRNA:   3'- auuAGGGAGG----GGGGGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 122891 0.72 0.278939
Target:  5'- -cGUgCCUCCCCCgCCaaGCCUCCCgCCa -3'
miRNA:   3'- auUAgGGAGGGGG-GGgaUGGGGGG-GG- -5'
29114 5' -64.2 NC_006146.1 + 76999 0.71 0.291506
Target:  5'- ----gCCUCcgugcuggCCCCCCCUGCCgcaaauuccgCCCCCCu -3'
miRNA:   3'- auuagGGAG--------GGGGGGGAUGG----------GGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 33853 0.71 0.296656
Target:  5'- gUGGUCCCcggaaccccaggCCCCCaCCCgGCCUCCUCCc -3'
miRNA:   3'- -AUUAGGGa-----------GGGGG-GGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 125497 0.71 0.297954
Target:  5'- gUAGUUuuUCCaaCCCCCggaGCCCCCUCCa -3'
miRNA:   3'- -AUUAGggAGGg-GGGGGa--UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 31309 0.71 0.297954
Target:  5'- ---gCCUUCUCCUCCUcGCCCCCCgCa -3'
miRNA:   3'- auuaGGGAGGGGGGGGaUGGGGGGgG- -5'
29114 5' -64.2 NC_006146.1 + 21315 0.71 0.297954
Target:  5'- ----gCCUCCUCUCCCgccGCCCCUUCCa -3'
miRNA:   3'- auuagGGAGGGGGGGGa--UGGGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.