miRNA display CGI


Results 101 - 120 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 5' -64.2 NC_006146.1 + 130411 0.71 0.304512
Target:  5'- gAGUCCgCUgCCuuucgcggCCCCUCUGCCCCCCUUc -3'
miRNA:   3'- aUUAGG-GA-GG--------GGGGGGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 33056 0.71 0.311179
Target:  5'- cAcgCCCaCCCaCCCCgaGCCCCCCUg -3'
miRNA:   3'- aUuaGGGaGGG-GGGGgaUGGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 109064 0.71 0.31118
Target:  5'- gAGUCCCggcaCCagCCCCaCUGCCCCCaCCa -3'
miRNA:   3'- aUUAGGGa---GGg-GGGG-GAUGGGGGgGG- -5'
29114 5' -64.2 NC_006146.1 + 42795 0.71 0.31118
Target:  5'- --cUCCUggacgccauugUCCCCUgCCUcgGCCCCUCCCg -3'
miRNA:   3'- auuAGGG-----------AGGGGGgGGA--UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 149311 0.71 0.31118
Target:  5'- --uUUUCUUgCCCCCUUgAUCCCCCCCu -3'
miRNA:   3'- auuAGGGAGgGGGGGGA-UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 119043 0.71 0.315913
Target:  5'- -cAUCCCcaUCCCCgggcucgggccaggCCCCgaGCCCCCCuCCa -3'
miRNA:   3'- auUAGGG--AGGGG--------------GGGGa-UGGGGGG-GG- -5'
29114 5' -64.2 NC_006146.1 + 373 0.71 0.317958
Target:  5'- cAAUCgCCgcgCCCCCUCagGCCCCgCCCg -3'
miRNA:   3'- aUUAG-GGa--GGGGGGGgaUGGGGgGGG- -5'
29114 5' -64.2 NC_006146.1 + 48296 0.71 0.317958
Target:  5'- ---cUCCUCCgCCCCUcGCCCUCCaCCg -3'
miRNA:   3'- auuaGGGAGGgGGGGGaUGGGGGG-GG- -5'
29114 5' -64.2 NC_006146.1 + 129831 0.71 0.317958
Target:  5'- -uGUCCCUggCCUCCCUCcACCCcgaggCCCCCa -3'
miRNA:   3'- auUAGGGA--GGGGGGGGaUGGG-----GGGGG- -5'
29114 5' -64.2 NC_006146.1 + 125355 0.71 0.317958
Target:  5'- ---gUCUUCCCUCCCCUGCCUggCCCUg -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGG--GGGGg -5'
29114 5' -64.2 NC_006146.1 + 125828 0.7 0.331846
Target:  5'- --cUCCCUCUCCCCacgaggcaCCUcaGCCgCCCCUa -3'
miRNA:   3'- auuAGGGAGGGGGG--------GGA--UGGgGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 144711 0.7 0.338956
Target:  5'- --uUCCCaggccgCCCCCUCCgaccuaAUCCCCUCCa -3'
miRNA:   3'- auuAGGGa-----GGGGGGGGa-----UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 159087 0.7 0.346175
Target:  5'- gGGUCCCaccUUCCCCUCCUGcaggguCCCCagCCCCu -3'
miRNA:   3'- aUUAGGG---AGGGGGGGGAU------GGGG--GGGG- -5'
29114 5' -64.2 NC_006146.1 + 32516 0.7 0.346175
Target:  5'- gAAUUUCUCCCCCUCCUGgCUCaaCCCUa -3'
miRNA:   3'- aUUAGGGAGGGGGGGGAUgGGG--GGGG- -5'
29114 5' -64.2 NC_006146.1 + 42453 0.7 0.350559
Target:  5'- aGGUCCCgcUCCCCCUCCcgcccggUcugcggcccggaucACCCUCCCCu -3'
miRNA:   3'- aUUAGGG--AGGGGGGGG-------A--------------UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 33666 0.7 0.35203
Target:  5'- gUGGUCCCcgggaccccaggCCCCCaCCCggcuUCCUCCCCg -3'
miRNA:   3'- -AUUAGGGa-----------GGGGG-GGGau--GGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 224 0.7 0.353504
Target:  5'- cGGUCCCcggggCgCCCCUg-GCCUCCCCCg -3'
miRNA:   3'- aUUAGGGa----GgGGGGGgaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 146716 0.7 0.353504
Target:  5'- ---gCCCagCCCUCCUCUGCCCUgUCCa -3'
miRNA:   3'- auuaGGGa-GGGGGGGGAUGGGGgGGG- -5'
29114 5' -64.2 NC_006146.1 + 129594 0.7 0.353504
Target:  5'- --cUCCCUCUgaaaaagCCCCUGCCCCUCaCCg -3'
miRNA:   3'- auuAGGGAGGgg-----GGGGAUGGGGGG-GG- -5'
29114 5' -64.2 NC_006146.1 + 80824 0.7 0.360942
Target:  5'- --cUCCaCUgCUCCCCCUGCaCCgCCUCCu -3'
miRNA:   3'- auuAGG-GAgGGGGGGGAUG-GG-GGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.