miRNA display CGI


Results 21 - 40 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 5' -64.2 NC_006146.1 + 42706 0.66 0.577532
Target:  5'- ---gCCCggcgCCgcggcgCCCCCCUggGCCgCCUCCCg -3'
miRNA:   3'- auuaGGGa---GG------GGGGGGA--UGG-GGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 4912 0.66 0.577532
Target:  5'- -cAUCCCUaCUCUuuggaUCCCUGCUCCUCCUc -3'
miRNA:   3'- auUAGGGA-GGGG-----GGGGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 126883 0.66 0.577532
Target:  5'- ---gCCCUCggCCgCCCCCU-CCCCgCCg -3'
miRNA:   3'- auuaGGGAG--GG-GGGGGAuGGGGgGGg -5'
29114 5' -64.2 NC_006146.1 + 114643 0.66 0.577532
Target:  5'- --cUCgCUCCCCgccgaggacggCCCCgccuCCgCCCCCg -3'
miRNA:   3'- auuAGgGAGGGG-----------GGGGau--GGgGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 35558 0.66 0.575627
Target:  5'- ---cCCCUCCUagaaauuaggcgCCCgUGCCUCCCCUc -3'
miRNA:   3'- auuaGGGAGGGg-----------GGGgAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 30796 0.66 0.568019
Target:  5'- ---cCCCUCUUCCaccaCCUccGCCaCCCCCUc -3'
miRNA:   3'- auuaGGGAGGGGGg---GGA--UGG-GGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 49690 0.66 0.568019
Target:  5'- gGcgUCgUCCUCCUCC-ACCCUCUCCa -3'
miRNA:   3'- aUuaGGgAGGGGGGGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 31748 0.66 0.568019
Target:  5'- cAAUUgCCUCCCCUauguacaaCaCUGCCCCCaCCUg -3'
miRNA:   3'- aUUAG-GGAGGGGGg-------G-GAUGGGGG-GGG- -5'
29114 5' -64.2 NC_006146.1 + 122314 0.66 0.568019
Target:  5'- ---aCCCUUCuggCCUCCCUgACCCCcgaggCCCCg -3'
miRNA:   3'- auuaGGGAGG---GGGGGGA-UGGGG-----GGGG- -5'
29114 5' -64.2 NC_006146.1 + 75581 0.66 0.568019
Target:  5'- aAAUCUCUCCCagaCCCuccgcgCCUACUgCCCCa -3'
miRNA:   3'- aUUAGGGAGGG---GGG------GGAUGGgGGGGg -5'
29114 5' -64.2 NC_006146.1 + 65531 0.66 0.568019
Target:  5'- ---aUCCUCCUCCUCCUcagaggaagagAUCUCCCCg -3'
miRNA:   3'- auuaGGGAGGGGGGGGA-----------UGGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 119320 0.66 0.568019
Target:  5'- ----gCCUCaguCCCCCCUucggccgcgccGCCUCCCCa -3'
miRNA:   3'- auuagGGAGg--GGGGGGA-----------UGGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 57169 0.66 0.568019
Target:  5'- cAcgCCUUCCUCaCCCCaguggGCCCCCUg- -3'
miRNA:   3'- aUuaGGGAGGGG-GGGGa----UGGGGGGgg -5'
29114 5' -64.2 NC_006146.1 + 18496 0.66 0.558546
Target:  5'- cAGUCCC-CUCgCCCCUgggccucagGCCCUCCgCg -3'
miRNA:   3'- aUUAGGGaGGGgGGGGA---------UGGGGGGgG- -5'
29114 5' -64.2 NC_006146.1 + 84470 0.66 0.558546
Target:  5'- ---cCCCUUCaagCCCagCUGCCCCCCUa -3'
miRNA:   3'- auuaGGGAGGg--GGGg-GAUGGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 24652 0.66 0.558546
Target:  5'- cAGUCCC-CUCgCCCCUgggccucagGCCCUCCgCg -3'
miRNA:   3'- aUUAGGGaGGGgGGGGA---------UGGGGGGgG- -5'
29114 5' -64.2 NC_006146.1 + 15418 0.66 0.558546
Target:  5'- cAGUCCC-CUCgCCCCUgggccucagGCCCUCCgCg -3'
miRNA:   3'- aUUAGGGaGGGgGGGGA---------UGGGGGGgG- -5'
29114 5' -64.2 NC_006146.1 + 21574 0.66 0.558546
Target:  5'- cAGUCCC-CUCgCCCCUgggccucagGCCCUCCgCg -3'
miRNA:   3'- aUUAGGGaGGGgGGGGA---------UGGGGGGgG- -5'
29114 5' -64.2 NC_006146.1 + 137869 0.66 0.558546
Target:  5'- -uGUCCCgggCCCCgCCCCggGCCggcagggggUCCCCg -3'
miRNA:   3'- auUAGGGa--GGGG-GGGGa-UGG---------GGGGGg -5'
29114 5' -64.2 NC_006146.1 + 27730 0.66 0.558546
Target:  5'- cAGUCCC-CUCgCCCCUgggccucagGCCCUCCgCg -3'
miRNA:   3'- aUUAGGGaGGGgGGGGA---------UGGGGGGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.