miRNA display CGI


Results 41 - 60 of 282 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 5' -64.2 NC_006146.1 + 102272 0.66 0.558546
Target:  5'- ---cCCCUCguuggucuCCCCgCCaGCCCUCCCUu -3'
miRNA:   3'- auuaGGGAG--------GGGGgGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 54090 0.66 0.558546
Target:  5'- cGcgCUCUUggaCCCUaaCCUGCuCCCCCCCg -3'
miRNA:   3'- aUuaGGGAGg--GGGG--GGAUG-GGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 137869 0.66 0.558546
Target:  5'- -uGUCCCgggCCCCgCCCCggGCCggcagggggUCCCCg -3'
miRNA:   3'- auUAGGGa--GGGG-GGGGa-UGG---------GGGGGg -5'
29114 5' -64.2 NC_006146.1 + 127260 0.66 0.549118
Target:  5'- ---cCCCUCUCCCCaggcgGCCaCgCCCCg -3'
miRNA:   3'- auuaGGGAGGGGGGgga--UGG-GgGGGG- -5'
29114 5' -64.2 NC_006146.1 + 111460 0.66 0.549118
Target:  5'- gAGUCCUgCCCCCugCCCUGCgCCUUCg -3'
miRNA:   3'- aUUAGGGaGGGGG--GGGAUGgGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 5125 0.66 0.549118
Target:  5'- ---cCCCUUCCCUUCCUGCaaccaCCUaCCCa -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGg----GGG-GGG- -5'
29114 5' -64.2 NC_006146.1 + 126103 0.66 0.547238
Target:  5'- aGGUCCCaguauuagacgcugCgCCCCCCUgaGCCCggcacggcacccucuCCCCCg -3'
miRNA:   3'- aUUAGGGa-------------GgGGGGGGA--UGGG---------------GGGGG- -5'
29114 5' -64.2 NC_006146.1 + 31176 0.66 0.545361
Target:  5'- uUAAUCCUgguaaccacacagCCCaCCCUCagacaccauggaUGCCUCCCCCu -3'
miRNA:   3'- -AUUAGGGa------------GGG-GGGGG------------AUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 67510 0.66 0.539741
Target:  5'- gAcgCCC-CCCaCUggcaggcgCCCUAUCUCCCCCa -3'
miRNA:   3'- aUuaGGGaGGG-GG--------GGGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 167053 0.66 0.539741
Target:  5'- gUGGUCCagggcgaCCCCCCUUACCCgCCg- -3'
miRNA:   3'- -AUUAGGgag----GGGGGGGAUGGGgGGgg -5'
29114 5' -64.2 NC_006146.1 + 126775 0.66 0.539741
Target:  5'- cAcgUCCUgCCCCCCCU-CCUCgCCg -3'
miRNA:   3'- aUuaGGGAgGGGGGGGAuGGGGgGGg -5'
29114 5' -64.2 NC_006146.1 + 128350 0.66 0.53974
Target:  5'- gAAUUCagcgCCCCCCC-ACCCCCCg- -3'
miRNA:   3'- aUUAGGgag-GGGGGGGaUGGGGGGgg -5'
29114 5' -64.2 NC_006146.1 + 81212 0.66 0.53974
Target:  5'- -uAUCCCaggCCgUUCCCCggGCCCCUUCCg -3'
miRNA:   3'- auUAGGGa--GG-GGGGGGa-UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 169687 0.66 0.538805
Target:  5'- ---gCCCgCCCCCgggucuuCCCggGCUCCCCCUc -3'
miRNA:   3'- auuaGGGaGGGGG-------GGGa-UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 167823 0.66 0.538805
Target:  5'- ---gCCCgCCCCCgggucuuCCCggGCUCCCCCUc -3'
miRNA:   3'- auuaGGGaGGGGG-------GGGa-UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 168755 0.66 0.538805
Target:  5'- ---gCCCgCCCCCgggucuuCCCggGCUCCCCCUc -3'
miRNA:   3'- auuaGGGaGGGGG-------GGGa-UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 170619 0.66 0.538805
Target:  5'- ---gCCCgCCCCCgggucuuCCCggGCUCCCCCUc -3'
miRNA:   3'- auuaGGGaGGGGG-------GGGa-UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 144627 0.67 0.524852
Target:  5'- ---cCCCUCCaCCCaggcuaauuccgccaCCCgUGCCCCCaCCUc -3'
miRNA:   3'- auuaGGGAGG-GGG---------------GGG-AUGGGGG-GGG- -5'
29114 5' -64.2 NC_006146.1 + 156093 0.67 0.521154
Target:  5'- ---gCCCUCCUCCggCCCggccgGCCUCUCCUu -3'
miRNA:   3'- auuaGGGAGGGGG--GGGa----UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 94310 0.67 0.521154
Target:  5'- ---aCCCUCUCCUcgUCCUGCUCggUCCCCa -3'
miRNA:   3'- auuaGGGAGGGGG--GGGAUGGG--GGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.