miRNA display CGI


Results 61 - 80 of 282 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 5' -64.2 NC_006146.1 + 156093 0.67 0.521154
Target:  5'- ---gCCCUCCUCCggCCCggccgGCCUCUCCUu -3'
miRNA:   3'- auuaGGGAGGGGG--GGGa----UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 54595 0.67 0.521153
Target:  5'- -uGUgCCUCCUUCCugaCCUGCCCCacauucaCCCg -3'
miRNA:   3'- auUAgGGAGGGGGG---GGAUGGGGg------GGG- -5'
29114 5' -64.2 NC_006146.1 + 75939 0.67 0.521153
Target:  5'- uUAAUgCCUggcugcacaCCCCCCUCUACCgcagcggccacgUCCCCUg -3'
miRNA:   3'- -AUUAgGGA---------GGGGGGGGAUGG------------GGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 44578 0.67 0.520231
Target:  5'- -uGUUCCUCCUggCCCCCgggccgcUGCCUUUCCCg -3'
miRNA:   3'- auUAGGGAGGG--GGGGG-------AUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 16849 0.67 0.511954
Target:  5'- ----aCCUCUCCCCuggCCUGUCCUCCCCn -3'
miRNA:   3'- auuagGGAGGGGGG---GGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 19927 0.67 0.511954
Target:  5'- ----aCCUCUCCCCuggCCUGUCCUCCCCn -3'
miRNA:   3'- auuagGGAGGGGGG---GGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 26082 0.67 0.511954
Target:  5'- ----aCCUCUCCCCuggCCUGUCCUCCCCn -3'
miRNA:   3'- auuagGGAGGGGGG---GGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 23004 0.67 0.511954
Target:  5'- ----aCCUCUCCCCuggCCUGUCCUCCCCn -3'
miRNA:   3'- auuagGGAGGGGGG---GGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 29160 0.67 0.511954
Target:  5'- ----aCCUCUCCCCuggCCUGUCCUCCCCn -3'
miRNA:   3'- auuagGGAGGGGGG---GGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 13771 0.67 0.511954
Target:  5'- ----aCCUCUCCCCuggCCUGUCCUCCCCn -3'
miRNA:   3'- auuagGGAGGGGGG---GGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 39274 0.67 0.511953
Target:  5'- -uAUCCCggCCacuaccaucaCCCCCaCUACCacagCCCCCa -3'
miRNA:   3'- auUAGGGa-GG----------GGGGG-GAUGGg---GGGGG- -5'
29114 5' -64.2 NC_006146.1 + 168311 0.67 0.511953
Target:  5'- --uUCCCUCUCCCUauucgACgCCCUCCa -3'
miRNA:   3'- auuAGGGAGGGGGGgga--UGgGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 78653 0.67 0.506466
Target:  5'- ---gCCCgCCCCCCagcagcagccacaggCCggGCCCgCCCCCc -3'
miRNA:   3'- auuaGGGaGGGGGG---------------GGa-UGGG-GGGGG- -5'
29114 5' -64.2 NC_006146.1 + 78593 0.67 0.506466
Target:  5'- ---gCCCgCCCCCCagcagcagccccaggCCggGCCCgCCCCCc -3'
miRNA:   3'- auuaGGGaGGGGGG---------------GGa-UGGG-GGGGG- -5'
29114 5' -64.2 NC_006146.1 + 78713 0.67 0.506466
Target:  5'- ---gCCCgCCCCCCagcagcagccccaggCCggGCCCgCCCCCc -3'
miRNA:   3'- auuaGGGaGGGGGG---------------GGa-UGGG-GGGGG- -5'
29114 5' -64.2 NC_006146.1 + 78861 0.67 0.506466
Target:  5'- ---gCCCgCCCCCCagcagcagccccaggCCggGCCCgCCCCCc -3'
miRNA:   3'- auuaGGGaGGGGGG---------------GGa-UGGG-GGGGG- -5'
29114 5' -64.2 NC_006146.1 + 141551 0.67 0.502822
Target:  5'- ----gCCUCaCCCCUCaGCCCCCUCUg -3'
miRNA:   3'- auuagGGAGgGGGGGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 53232 0.67 0.502822
Target:  5'- ---gCCUUCCCUCUCUUuCUCCCUCCu -3'
miRNA:   3'- auuaGGGAGGGGGGGGAuGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 96178 0.67 0.502821
Target:  5'- gGGUCCCUCCagggCCUuucuggCCCUgagcguaaGCCCCCCUg -3'
miRNA:   3'- aUUAGGGAGG----GGG------GGGA--------UGGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 149484 0.67 0.501912
Target:  5'- -----gCUCCCCCauggggaCCCUGCCCUCUCUg -3'
miRNA:   3'- auuaggGAGGGGG-------GGGAUGGGGGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.