miRNA display CGI


Results 81 - 100 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 5' -64.2 NC_006146.1 + 134660 0.67 0.493761
Target:  5'- ---gCUCUCCagaagCCgCCCUGCCUCCUCCc -3'
miRNA:   3'- auuaGGGAGGg----GG-GGGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 119373 0.67 0.493761
Target:  5'- -cAUCCCUCacagcccaaCUCCCaaACCCCCgCCa -3'
miRNA:   3'- auUAGGGAGg--------GGGGGgaUGGGGGgGG- -5'
29114 5' -64.2 NC_006146.1 + 162990 0.67 0.484776
Target:  5'- gGGUCCC-CCUUCUCCUcgGCCUCCUCUu -3'
miRNA:   3'- aUUAGGGaGGGGGGGGA--UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 28713 0.67 0.484776
Target:  5'- --cUCCgCUCCCCUCUgaGCCCCguugaaCCCa -3'
miRNA:   3'- auuAGG-GAGGGGGGGgaUGGGGg-----GGG- -5'
29114 5' -64.2 NC_006146.1 + 170794 0.67 0.484776
Target:  5'- ---cCCCUCUCCgaaaucaCCCUugcgugacgaaGCCCCuCCCCg -3'
miRNA:   3'- auuaGGGAGGGGg------GGGA-----------UGGGG-GGGG- -5'
29114 5' -64.2 NC_006146.1 + 13323 0.67 0.484776
Target:  5'- --cUCCgCUCCCCUCUgaGCCCCguugaaCCCa -3'
miRNA:   3'- auuAGG-GAGGGGGGGgaUGGGGg-----GGG- -5'
29114 5' -64.2 NC_006146.1 + 130059 0.67 0.484776
Target:  5'- ----gCCUCCaagagcgCCCCCUGCCCCUUaCCa -3'
miRNA:   3'- auuagGGAGGg------GGGGGAUGGGGGG-GG- -5'
29114 5' -64.2 NC_006146.1 + 165257 0.67 0.484776
Target:  5'- ---gUgCUCgUCCCCCUGuCCCCCgCCa -3'
miRNA:   3'- auuaGgGAGgGGGGGGAU-GGGGGgGG- -5'
29114 5' -64.2 NC_006146.1 + 16401 0.67 0.484776
Target:  5'- --cUCCgCUCCCCUCUgaGCCCCguugaaCCCa -3'
miRNA:   3'- auuAGG-GAGGGGGGGgaUGGGGg-----GGG- -5'
29114 5' -64.2 NC_006146.1 + 22557 0.67 0.484776
Target:  5'- --cUCCgCUCCCCUCUgaGCCCCguugaaCCCa -3'
miRNA:   3'- auuAGG-GAGGGGGGGgaUGGGGg-----GGG- -5'
29114 5' -64.2 NC_006146.1 + 25635 0.67 0.484776
Target:  5'- --cUCCgCUCCCCUCUgaGCCCCguugaaCCCa -3'
miRNA:   3'- auuAGG-GAGGGGGGGgaUGGGGg-----GGG- -5'
29114 5' -64.2 NC_006146.1 + 19479 0.67 0.484776
Target:  5'- --cUCCgCUCCCCUCUgaGCCCCguugaaCCCa -3'
miRNA:   3'- auuAGG-GAGGGGGGGgaUGGGGg-----GGG- -5'
29114 5' -64.2 NC_006146.1 + 56905 0.67 0.481204
Target:  5'- cUGAUCCacgccagCUCCUucaacaacgcggagCCCCCgggcACCCCCCUCu -3'
miRNA:   3'- -AUUAGG-------GAGGG--------------GGGGGa---UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 4160 0.68 0.479422
Target:  5'- cUGGUCCCguccgaaacccaugCCCauuggcucaaCCCCUcacACCCCCCUCc -3'
miRNA:   3'- -AUUAGGGa-------------GGGg---------GGGGA---UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 155606 0.68 0.47587
Target:  5'- ----gCCUCCggCCCCU-CCUCCCCCu -3'
miRNA:   3'- auuagGGAGGggGGGGAuGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 75444 0.68 0.47587
Target:  5'- --cUCUCagagCCCCCCuuCCUGCCCUUCUCg -3'
miRNA:   3'- auuAGGGa---GGGGGG--GGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 156045 0.68 0.47587
Target:  5'- --cUCCCUggCUgCCCCCUcgGCCUCCCgCg -3'
miRNA:   3'- auuAGGGA--GGgGGGGGA--UGGGGGGgG- -5'
29114 5' -64.2 NC_006146.1 + 31377 0.68 0.469684
Target:  5'- ---cCCCUuggcccccauacagaCCUCCUCCUACuaaacaccaggcaCCCCCCCg -3'
miRNA:   3'- auuaGGGA---------------GGGGGGGGAUG-------------GGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 2535 0.68 0.467046
Target:  5'- ---gCCCgCCCgaCCCCCcGCCCCgggaCCCCg -3'
miRNA:   3'- auuaGGGaGGG--GGGGGaUGGGG----GGGG- -5'
29114 5' -64.2 NC_006146.1 + 3467 0.68 0.467046
Target:  5'- ---gCCCgCCCgaCCCCCcGCCCCgggaCCCCg -3'
miRNA:   3'- auuaGGGaGGG--GGGGGaUGGGG----GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.