miRNA display CGI


Results 101 - 120 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 5' -64.2 NC_006146.1 + 672 0.68 0.467046
Target:  5'- ---gCCCgCCCgaCCCCCcGCCCCgggaCCCCg -3'
miRNA:   3'- auuaGGGaGGG--GGGGGaUGGGG----GGGG- -5'
29114 5' -64.2 NC_006146.1 + 1603 0.68 0.467046
Target:  5'- ---gCCCgCCCgaCCCCCcGCCCCgggaCCCCg -3'
miRNA:   3'- auuaGGGaGGG--GGGGGaUGGGG----GGGG- -5'
29114 5' -64.2 NC_006146.1 + 33496 0.68 0.467046
Target:  5'- gUGGUCCCcgggaCCCCagcaCCCUcccgGCCUCCCUCc -3'
miRNA:   3'- -AUUAGGGa----GGGGg---GGGA----UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 2535 0.68 0.467046
Target:  5'- ---gCCCgCCCgaCCCCCcGCCCCgggaCCCCg -3'
miRNA:   3'- auuaGGGaGGG--GGGGGaUGGGG----GGGG- -5'
29114 5' -64.2 NC_006146.1 + 3467 0.68 0.467046
Target:  5'- ---gCCCgCCCgaCCCCCcGCCCCgggaCCCCg -3'
miRNA:   3'- auuaGGGaGGG--GGGGGaUGGGG----GGGG- -5'
29114 5' -64.2 NC_006146.1 + 4122 0.68 0.467046
Target:  5'- ---gCCCUuuucaaacUCCCCUCCUGgUCCCCUCg -3'
miRNA:   3'- auuaGGGA--------GGGGGGGGAUgGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 31528 0.68 0.461792
Target:  5'- --uUCuCCUacuaaacagcaggcaCCCCCCCCggcGCCgCCCCUa -3'
miRNA:   3'- auuAG-GGA---------------GGGGGGGGa--UGGgGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 113853 0.68 0.458307
Target:  5'- ---cCCCUCCCgCCUCaACCCUggcggcuucgCCCCg -3'
miRNA:   3'- auuaGGGAGGGgGGGGaUGGGG----------GGGG- -5'
29114 5' -64.2 NC_006146.1 + 1304 0.68 0.458307
Target:  5'- cAAUCgCCgcgCCCCCUCagGCCCCaCCCg -3'
miRNA:   3'- aUUAG-GGa--GGGGGGGgaUGGGGgGGG- -5'
29114 5' -64.2 NC_006146.1 + 2236 0.68 0.458307
Target:  5'- cAAUCgCCgcgCCCCCUCagGCCCCaCCCg -3'
miRNA:   3'- aUUAG-GGa--GGGGGGGgaUGGGGgGGG- -5'
29114 5' -64.2 NC_006146.1 + 67737 0.68 0.458307
Target:  5'- cGGUCCgCUCCgCCCagacggaggagCCaaagACCUCCCCCa -3'
miRNA:   3'- aUUAGG-GAGGgGGG-----------GGa---UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 3168 0.68 0.458307
Target:  5'- cAAUCgCCgcgCCCCCUCagGCCCCaCCCg -3'
miRNA:   3'- aUUAG-GGa--GGGGGGGgaUGGGGgGGG- -5'
29114 5' -64.2 NC_006146.1 + 123160 0.68 0.458307
Target:  5'- -cGUCCCcagggccagCCCCUCCaagACCUCCCCa -3'
miRNA:   3'- auUAGGGa--------GGGGGGGga-UGGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 119220 0.68 0.449657
Target:  5'- cGAUCagcCCCCgCCCCgucGCCCCCCUUc -3'
miRNA:   3'- aUUAGggaGGGG-GGGGa--UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 42034 0.68 0.448796
Target:  5'- ----gCCUCCgCCCCCUcuucgugGCCCUUCCUg -3'
miRNA:   3'- auuagGGAGGgGGGGGA-------UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 836 0.68 0.441097
Target:  5'- ---gCCaUCCCCacgcgcggCCCCggGCCCUCCCCg -3'
miRNA:   3'- auuaGGgAGGGG--------GGGGa-UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 1768 0.68 0.441097
Target:  5'- ---gCCaUCCCCacgcgcggCCCCggGCCCUCCCCg -3'
miRNA:   3'- auuaGGgAGGGG--------GGGGa-UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 2700 0.68 0.441097
Target:  5'- ---gCCaUCCCCacgcgcggCCCCggGCCCUCCCCg -3'
miRNA:   3'- auuaGGgAGGGG--------GGGGa-UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 3632 0.68 0.441097
Target:  5'- ---gCCaUCCCCacgcgcggCCCCggGCCCUCCCCg -3'
miRNA:   3'- auuaGGgAGGGG--------GGGGa-UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 14372 0.68 0.441097
Target:  5'- gGGUCCCgggaucUCgCCUCCCgcUCCCCUCCg -3'
miRNA:   3'- aUUAGGG------AGgGGGGGGauGGGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.