miRNA display CGI


Results 121 - 140 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 5' -64.2 NC_006146.1 + 2700 0.68 0.441097
Target:  5'- ---gCCaUCCCCacgcgcggCCCCggGCCCUCCCCg -3'
miRNA:   3'- auuaGGgAGGGG--------GGGGa-UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 130997 0.68 0.43263
Target:  5'- ---aCCCUCCUCCgUCguuuCCCgCCCCg -3'
miRNA:   3'- auuaGGGAGGGGGgGGau--GGGgGGGG- -5'
29114 5' -64.2 NC_006146.1 + 78803 0.69 0.427596
Target:  5'- ---gCCCgCCCCCCagcagcagccccaggCCggGCCgCCCCCCg -3'
miRNA:   3'- auuaGGGaGGGGGG---------------GGa-UGG-GGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 169088 0.69 0.424259
Target:  5'- ---gCCUUCCCCCgUCUGCUCCCgCg -3'
miRNA:   3'- auuaGGGAGGGGGgGGAUGGGGGgGg -5'
29114 5' -64.2 NC_006146.1 + 21070 0.69 0.424259
Target:  5'- --cUCUgUCCCCUUCCUuCCCUCgCCCa -3'
miRNA:   3'- auuAGGgAGGGGGGGGAuGGGGG-GGG- -5'
29114 5' -64.2 NC_006146.1 + 27226 0.69 0.424259
Target:  5'- --cUCUgUCCCCUUCCUuCCCUCgCCCa -3'
miRNA:   3'- auuAGGgAGGGGGGGGAuGGGGG-GGG- -5'
29114 5' -64.2 NC_006146.1 + 109220 0.69 0.424259
Target:  5'- cGGUCCCcaacccgugCCCCCCUCUcUCCaCCUCCu -3'
miRNA:   3'- aUUAGGGa--------GGGGGGGGAuGGG-GGGGG- -5'
29114 5' -64.2 NC_006146.1 + 70629 0.69 0.424259
Target:  5'- --cUgCCUCCgCCCCaUUGCCCCCaCCa -3'
miRNA:   3'- auuAgGGAGGgGGGG-GAUGGGGGgGG- -5'
29114 5' -64.2 NC_006146.1 + 9128 0.69 0.424259
Target:  5'- aGAUUCaggCCCCCgCCCagGCgCCCCCUCg -3'
miRNA:   3'- aUUAGGga-GGGGG-GGGa-UG-GGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 14915 0.69 0.424259
Target:  5'- --cUCUgUCCCCUUCCUuCCCUCgCCCa -3'
miRNA:   3'- auuAGGgAGGGGGGGGAuGGGGG-GGG- -5'
29114 5' -64.2 NC_006146.1 + 17992 0.69 0.424259
Target:  5'- --cUCUgUCCCCUUCCUuCCCUCgCCCa -3'
miRNA:   3'- auuAGGgAGGGGGGGGAuGGGGG-GGG- -5'
29114 5' -64.2 NC_006146.1 + 167224 0.69 0.424259
Target:  5'- ---gCCUUCCCCCgUCUGCUCCCgCg -3'
miRNA:   3'- auuaGGGAGGGGGgGGAUGGGGGgGg -5'
29114 5' -64.2 NC_006146.1 + 24148 0.69 0.424259
Target:  5'- --cUCUgUCCCCUUCCUuCCCUCgCCCa -3'
miRNA:   3'- auuAGGgAGGGGGGGGAuGGGGG-GGG- -5'
29114 5' -64.2 NC_006146.1 + 168156 0.69 0.424259
Target:  5'- ---gCCUUCCCCCgUCUGCUCCCgCg -3'
miRNA:   3'- auuaGGGAGGGGGgGGAUGGGGGgGg -5'
29114 5' -64.2 NC_006146.1 + 3019 0.69 0.424259
Target:  5'- gGGUCCCcgggCCgCCCCgggGCUCCCCCg -3'
miRNA:   3'- aUUAGGGa---GGgGGGGga-UGGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 2087 0.69 0.424259
Target:  5'- gGGUCCCcgggCCgCCCCgggGCUCCCCCg -3'
miRNA:   3'- aUUAGGGa---GGgGGGGga-UGGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 1155 0.69 0.424259
Target:  5'- gGGUCCCcgggCCgCCCCgggGCUCCCCCg -3'
miRNA:   3'- aUUAGGGa---GGgGGGGga-UGGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 170020 0.69 0.424259
Target:  5'- ---gCCUUCCCCCgUCUGCUCCCgCg -3'
miRNA:   3'- auuaGGGAGGGGGgGGAUGGGGGgGg -5'
29114 5' -64.2 NC_006146.1 + 51915 0.69 0.415985
Target:  5'- --cUUCCUCCCCCCa--GCUCCUCCUu -3'
miRNA:   3'- auuAGGGAGGGGGGggaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 94521 0.69 0.415985
Target:  5'- cGGUCCCUCCCCCggCgcGCCCUCUCg -3'
miRNA:   3'- aUUAGGGAGGGGGggGa-UGGGGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.