miRNA display CGI


Results 1 - 20 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 5' -64.2 NC_006146.1 + 224 0.7 0.353504
Target:  5'- cGGUCCCcggggCgCCCCUg-GCCUCCCCCg -3'
miRNA:   3'- aUUAGGGa----GgGGGGGgaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 373 0.71 0.317958
Target:  5'- cAAUCgCCgcgCCCCCUCagGCCCCgCCCg -3'
miRNA:   3'- aUUAG-GGa--GGGGGGGgaUGGGGgGGG- -5'
29114 5' -64.2 NC_006146.1 + 500 0.76 0.152575
Target:  5'- ---cCCCUCCgCCCCCgagGCCCCCaggggaggCCCg -3'
miRNA:   3'- auuaGGGAGGgGGGGGa--UGGGGG--------GGG- -5'
29114 5' -64.2 NC_006146.1 + 611 0.74 0.184644
Target:  5'- ---gCCCUgCCCCCUCU-CCCCCgCCa -3'
miRNA:   3'- auuaGGGAgGGGGGGGAuGGGGGgGG- -5'
29114 5' -64.2 NC_006146.1 + 672 0.68 0.467046
Target:  5'- ---gCCCgCCCgaCCCCCcGCCCCgggaCCCCg -3'
miRNA:   3'- auuaGGGaGGG--GGGGGaUGGGG----GGGG- -5'
29114 5' -64.2 NC_006146.1 + 719 0.69 0.399738
Target:  5'- ---cCCCggCCCCgCCCUcgggaGCCCCCUCa -3'
miRNA:   3'- auuaGGGa-GGGGgGGGA-----UGGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 797 0.76 0.145387
Target:  5'- ---cCCCgccggCCCCCCCUgcggcgccgGCCCCUCCCg -3'
miRNA:   3'- auuaGGGa----GGGGGGGGa--------UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 836 0.68 0.441097
Target:  5'- ---gCCaUCCCCacgcgcggCCCCggGCCCUCCCCg -3'
miRNA:   3'- auuaGGgAGGGG--------GGGGa-UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 1155 0.69 0.424259
Target:  5'- gGGUCCCcgggCCgCCCCgggGCUCCCCCg -3'
miRNA:   3'- aUUAGGGa---GGgGGGGga-UGGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 1304 0.68 0.458307
Target:  5'- cAAUCgCCgcgCCCCCUCagGCCCCaCCCg -3'
miRNA:   3'- aUUAG-GGa--GGGGGGGgaUGGGGgGGG- -5'
29114 5' -64.2 NC_006146.1 + 1431 0.76 0.152575
Target:  5'- ---cCCCUCCgCCCCCgagGCCCCCaggggaggCCCg -3'
miRNA:   3'- auuaGGGAGGgGGGGGa--UGGGGG--------GGG- -5'
29114 5' -64.2 NC_006146.1 + 1542 0.74 0.184644
Target:  5'- ---gCCCUgCCCCCUCU-CCCCCgCCa -3'
miRNA:   3'- auuaGGGAgGGGGGGGAuGGGGGgGG- -5'
29114 5' -64.2 NC_006146.1 + 1603 0.68 0.467046
Target:  5'- ---gCCCgCCCgaCCCCCcGCCCCgggaCCCCg -3'
miRNA:   3'- auuaGGGaGGG--GGGGGaUGGGG----GGGG- -5'
29114 5' -64.2 NC_006146.1 + 1650 0.69 0.399738
Target:  5'- ---cCCCggCCCCgCCCUcgggaGCCCCCUCa -3'
miRNA:   3'- auuaGGGa-GGGGgGGGA-----UGGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 1728 0.75 0.160084
Target:  5'- ---cCCCgccggCCCCCCCUgcaggcgccgGCCCCUCCCg -3'
miRNA:   3'- auuaGGGa----GGGGGGGGa---------UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 1768 0.68 0.441097
Target:  5'- ---gCCaUCCCCacgcgcggCCCCggGCCCUCCCCg -3'
miRNA:   3'- auuaGGgAGGGG--------GGGGa-UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 2087 0.69 0.424259
Target:  5'- gGGUCCCcgggCCgCCCCgggGCUCCCCCg -3'
miRNA:   3'- aUUAGGGa---GGgGGGGga-UGGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 2236 0.68 0.458307
Target:  5'- cAAUCgCCgcgCCCCCUCagGCCCCaCCCg -3'
miRNA:   3'- aUUAG-GGa--GGGGGGGgaUGGGGgGGG- -5'
29114 5' -64.2 NC_006146.1 + 2363 0.76 0.152575
Target:  5'- ---cCCCUCCgCCCCCgagGCCCCCaggggaggCCCg -3'
miRNA:   3'- auuaGGGAGGgGGGGGa--UGGGGG--------GGG- -5'
29114 5' -64.2 NC_006146.1 + 2474 0.74 0.184644
Target:  5'- ---gCCCUgCCCCCUCU-CCCCCgCCa -3'
miRNA:   3'- auuaGGGAgGGGGGGGAuGGGGGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.