miRNA display CGI


Results 41 - 60 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 5' -64.2 NC_006146.1 + 5156 0.76 0.145387
Target:  5'- --uUCCCaUCCCCCuCCCUgACCCCCgCUCu -3'
miRNA:   3'- auuAGGG-AGGGGG-GGGA-UGGGGG-GGG- -5'
29114 5' -64.2 NC_006146.1 + 8479 0.69 0.383902
Target:  5'- ---gCUUUCUCUCCCgCUACCUUCCCCa -3'
miRNA:   3'- auuaGGGAGGGGGGG-GAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 9128 0.69 0.424259
Target:  5'- aGAUUCaggCCCCCgCCCagGCgCCCCCUCg -3'
miRNA:   3'- aUUAGGga-GGGGG-GGGa-UG-GGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 12339 0.66 0.558546
Target:  5'- cAGUCCC-CUCgCCCCUgggccucagGCCCUCCgCg -3'
miRNA:   3'- aUUAGGGaGGGgGGGGA---------UGGGGGGgG- -5'
29114 5' -64.2 NC_006146.1 + 12524 0.76 0.145387
Target:  5'- ---cUCCUCUCCUCCCUGCCUUCCCUc -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 12545 0.72 0.278939
Target:  5'- --nUCCCUCUcuguCCUCCCcGCCUCUCCCa -3'
miRNA:   3'- auuAGGGAGG----GGGGGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 13323 0.67 0.484776
Target:  5'- --cUCCgCUCCCCUCUgaGCCCCguugaaCCCa -3'
miRNA:   3'- auuAGG-GAGGGGGGGgaUGGGGg-----GGG- -5'
29114 5' -64.2 NC_006146.1 + 13662 0.83 0.050967
Target:  5'- --cUCCCUCCUCCCCuCUuCCCCCUCCa -3'
miRNA:   3'- auuAGGGAGGGGGGG-GAuGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 13691 0.72 0.255106
Target:  5'- cAGUCCC-CCCCCCCCgcuuucgGCCUCUCg- -3'
miRNA:   3'- aUUAGGGaGGGGGGGGa------UGGGGGGgg -5'
29114 5' -64.2 NC_006146.1 + 13771 0.67 0.511954
Target:  5'- ----aCCUCUCCCCuggCCUGUCCUCCCCn -3'
miRNA:   3'- auuagGGAGGGGGG---GGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 13796 0.81 0.060901
Target:  5'- ----gCCUCCCUCCCCgGCCCCCCUCa -3'
miRNA:   3'- auuagGGAGGGGGGGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 13926 0.78 0.100646
Target:  5'- ----gCCUCCCCCUCCUcucuCCCUCCCCg -3'
miRNA:   3'- auuagGGAGGGGGGGGAu---GGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 14071 0.72 0.249415
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCuCCCCg -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGG-GGGG- -5'
29114 5' -64.2 NC_006146.1 + 14183 0.73 0.22252
Target:  5'- aGGUgCCCUCUgagCCCCCUUugCCCCCUg -3'
miRNA:   3'- aUUA-GGGAGG---GGGGGGAugGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 14372 0.68 0.441097
Target:  5'- gGGUCCCgggaucUCgCCUCCCgcUCCCCUCCg -3'
miRNA:   3'- aUUAGGG------AGgGGGGGGauGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 14876 0.66 0.58708
Target:  5'- ---gCCCUCCaggCCCUCCgagGCCCCaggCCUa -3'
miRNA:   3'- auuaGGGAGG---GGGGGGa--UGGGGg--GGG- -5'
29114 5' -64.2 NC_006146.1 + 14915 0.69 0.424259
Target:  5'- --cUCUgUCCCCUUCCUuCCCUCgCCCa -3'
miRNA:   3'- auuAGGgAGGGGGGGGAuGGGGG-GGG- -5'
29114 5' -64.2 NC_006146.1 + 15418 0.66 0.558546
Target:  5'- cAGUCCC-CUCgCCCCUgggccucagGCCCUCCgCg -3'
miRNA:   3'- aUUAGGGaGGGgGGGGA---------UGGGGGGgG- -5'
29114 5' -64.2 NC_006146.1 + 15603 0.76 0.145387
Target:  5'- ---cUCCUCUCCUCCCUGCCUUCCCUc -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 15624 0.72 0.278939
Target:  5'- --nUCCCUCUcuguCCUCCCcGCCUCUCCCa -3'
miRNA:   3'- auuAGGGAGG----GGGGGGaUGGGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.