miRNA display CGI


Results 61 - 80 of 282 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 5' -64.2 NC_006146.1 + 16401 0.67 0.484776
Target:  5'- --cUCCgCUCCCCUCUgaGCCCCguugaaCCCa -3'
miRNA:   3'- auuAGG-GAGGGGGGGgaUGGGGg-----GGG- -5'
29114 5' -64.2 NC_006146.1 + 16740 0.83 0.050967
Target:  5'- --cUCCCUCCUCCCCuCUuCCCCCUCCa -3'
miRNA:   3'- auuAGGGAGGGGGGG-GAuGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 16769 0.72 0.255106
Target:  5'- cAGUCCC-CCCCCCCCgcuuucgGCCUCUCg- -3'
miRNA:   3'- aUUAGGGaGGGGGGGGa------UGGGGGGgg -5'
29114 5' -64.2 NC_006146.1 + 16849 0.67 0.511954
Target:  5'- ----aCCUCUCCCCuggCCUGUCCUCCCCn -3'
miRNA:   3'- auuagGGAGGGGGG---GGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 16874 0.81 0.060901
Target:  5'- ----gCCUCCCUCCCCgGCCCCCCUCa -3'
miRNA:   3'- auuagGGAGGGGGGGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 17003 0.78 0.100646
Target:  5'- ----gCCUCCCCCUCCUcucuCCCUCCCCg -3'
miRNA:   3'- auuagGGAGGGGGGGGAu---GGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 17149 0.72 0.249415
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCuCCCCg -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGG-GGGG- -5'
29114 5' -64.2 NC_006146.1 + 17261 0.73 0.22252
Target:  5'- aGGUgCCCUCUgagCCCCCUUugCCCCCUg -3'
miRNA:   3'- aUUA-GGGAGG---GGGGGGAugGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 17992 0.69 0.424259
Target:  5'- --cUCUgUCCCCUUCCUuCCCUCgCCCa -3'
miRNA:   3'- auuAGGgAGGGGGGGGAuGGGGG-GGG- -5'
29114 5' -64.2 NC_006146.1 + 18496 0.66 0.558546
Target:  5'- cAGUCCC-CUCgCCCCUgggccucagGCCCUCCgCg -3'
miRNA:   3'- aUUAGGGaGGGgGGGGA---------UGGGGGGgG- -5'
29114 5' -64.2 NC_006146.1 + 18681 0.76 0.145387
Target:  5'- ---cUCCUCUCCUCCCUGCCUUCCCUc -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 18702 0.72 0.278939
Target:  5'- --nUCCCUCUcuguCCUCCCcGCCUCUCCCa -3'
miRNA:   3'- auuAGGGAGG----GGGGGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 19479 0.67 0.484776
Target:  5'- --cUCCgCUCCCCUCUgaGCCCCguugaaCCCa -3'
miRNA:   3'- auuAGG-GAGGGGGGGgaUGGGGg-----GGG- -5'
29114 5' -64.2 NC_006146.1 + 19818 0.83 0.050967
Target:  5'- --cUCCCUCCUCCCCuCUuCCCCCUCCa -3'
miRNA:   3'- auuAGGGAGGGGGGG-GAuGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 19847 0.72 0.255106
Target:  5'- cAGUCCC-CCCCCCCCgcuuucgGCCUCUCg- -3'
miRNA:   3'- aUUAGGGaGGGGGGGGa------UGGGGGGgg -5'
29114 5' -64.2 NC_006146.1 + 19927 0.67 0.511954
Target:  5'- ----aCCUCUCCCCuggCCUGUCCUCCCCn -3'
miRNA:   3'- auuagGGAGGGGGG---GGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 19952 0.76 0.156289
Target:  5'- ----gCCUCCCUCCCg-GCCCCCCUCa -3'
miRNA:   3'- auuagGGAGGGGGGGgaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 20081 0.78 0.100646
Target:  5'- ----gCCUCCCCCUCCUcucuCCCUCCCCg -3'
miRNA:   3'- auuagGGAGGGGGGGGAu---GGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 20170 0.69 0.415985
Target:  5'- aGAUCCCUCgCCUCUUUGCagagggCCCCCg -3'
miRNA:   3'- aUUAGGGAGgGGGGGGAUGgg----GGGGG- -5'
29114 5' -64.2 NC_006146.1 + 20227 0.72 0.249415
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCuCCCCg -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGG-GGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.