miRNA display CGI


Results 1 - 20 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 5' -64.2 NC_006146.1 + 170894 0.77 0.119633
Target:  5'- ---cCCCUCaaCCCCCCCU-CCCCCCUg -3'
miRNA:   3'- auuaGGGAG--GGGGGGGAuGGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 170794 0.67 0.484776
Target:  5'- ---cCCCUCUCCgaaaucaCCCUugcgugacgaaGCCCCuCCCCg -3'
miRNA:   3'- auuaGGGAGGGGg------GGGA-----------UGGGG-GGGG- -5'
29114 5' -64.2 NC_006146.1 + 170619 0.66 0.538805
Target:  5'- ---gCCCgCCCCCgggucuuCCCggGCUCCCCCUc -3'
miRNA:   3'- auuaGGGaGGGGG-------GGGa-UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 170020 0.69 0.424259
Target:  5'- ---gCCUUCCCCCgUCUGCUCCCgCg -3'
miRNA:   3'- auuaGGGAGGGGGgGGAUGGGGGgGg -5'
29114 5' -64.2 NC_006146.1 + 169687 0.66 0.538805
Target:  5'- ---gCCCgCCCCCgggucuuCCCggGCUCCCCCUc -3'
miRNA:   3'- auuaGGGaGGGGG-------GGGa-UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 169088 0.69 0.424259
Target:  5'- ---gCCUUCCCCCgUCUGCUCCCgCg -3'
miRNA:   3'- auuaGGGAGGGGGgGGAUGGGGGgGg -5'
29114 5' -64.2 NC_006146.1 + 168755 0.66 0.538805
Target:  5'- ---gCCCgCCCCCgggucuuCCCggGCUCCCCCUc -3'
miRNA:   3'- auuaGGGaGGGGG-------GGGa-UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 168311 0.67 0.511953
Target:  5'- --uUCCCUCUCCCUauucgACgCCCUCCa -3'
miRNA:   3'- auuAGGGAGGGGGGgga--UGgGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 168156 0.69 0.424259
Target:  5'- ---gCCUUCCCCCgUCUGCUCCCgCg -3'
miRNA:   3'- auuaGGGAGGGGGgGGAUGGGGGgGg -5'
29114 5' -64.2 NC_006146.1 + 167823 0.66 0.538805
Target:  5'- ---gCCCgCCCCCgggucuuCCCggGCUCCCCCUc -3'
miRNA:   3'- auuaGGGaGGGGG-------GGGa-UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 167649 0.81 0.060901
Target:  5'- cUGcgCCgUCCCCaggCCCCUAUCCCCCCCu -3'
miRNA:   3'- -AUuaGGgAGGGG---GGGGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 167224 0.69 0.424259
Target:  5'- ---gCCUUCCCCCgUCUGCUCCCgCg -3'
miRNA:   3'- auuaGGGAGGGGGgGGAUGGGGGgGg -5'
29114 5' -64.2 NC_006146.1 + 167122 0.83 0.046018
Target:  5'- ---gCCCcCCCCCCCCccCCCCCCCCg -3'
miRNA:   3'- auuaGGGaGGGGGGGGauGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 167053 0.66 0.539741
Target:  5'- gUGGUCCagggcgaCCCCCCUUACCCgCCg- -3'
miRNA:   3'- -AUUAGGgag----GGGGGGGAUGGGgGGgg -5'
29114 5' -64.2 NC_006146.1 + 166036 0.74 0.202816
Target:  5'- gGGUgCCUguggcCCCCgCCCCUGCCCCuauuCCCCu -3'
miRNA:   3'- aUUAgGGA-----GGGG-GGGGAUGGGG----GGGG- -5'
29114 5' -64.2 NC_006146.1 + 165257 0.67 0.484776
Target:  5'- ---gUgCUCgUCCCCCUGuCCCCCgCCa -3'
miRNA:   3'- auuaGgGAGgGGGGGGAU-GGGGGgGG- -5'
29114 5' -64.2 NC_006146.1 + 164817 0.68 0.467046
Target:  5'- --uUUCCUCCgUCUCC-AUCUCCCCCa -3'
miRNA:   3'- auuAGGGAGGgGGGGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 162990 0.67 0.484776
Target:  5'- gGGUCCC-CCUUCUCCUcgGCCUCCUCUu -3'
miRNA:   3'- aUUAGGGaGGGGGGGGA--UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 162647 0.79 0.084526
Target:  5'- --cUCCCUCCCCCuCCCUACUCUCCa- -3'
miRNA:   3'- auuAGGGAGGGGG-GGGAUGGGGGGgg -5'
29114 5' -64.2 NC_006146.1 + 159087 0.7 0.346175
Target:  5'- gGGUCCCaccUUCCCCUCCUGcaggguCCCCagCCCCu -3'
miRNA:   3'- aUUAGGG---AGGGGGGGGAU------GGGG--GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.