miRNA display CGI


Results 21 - 40 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 5' -64.2 NC_006146.1 + 156967 0.69 0.376142
Target:  5'- -uGUCCUgggCUCCCCCggGCCCaCCCgCCa -3'
miRNA:   3'- auUAGGGa--GGGGGGGgaUGGG-GGG-GG- -5'
29114 5' -64.2 NC_006146.1 + 156867 0.7 0.360942
Target:  5'- uUGcgCCUgCCCCCgCCUGCUCCCugCCCu -3'
miRNA:   3'- -AUuaGGGaGGGGGgGGAUGGGGG--GGG- -5'
29114 5' -64.2 NC_006146.1 + 156093 0.67 0.521154
Target:  5'- ---gCCCUCCUCCggCCCggccgGCCUCUCCUu -3'
miRNA:   3'- auuaGGGAGGGGG--GGGa----UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 156045 0.68 0.47587
Target:  5'- --cUCCCUggCUgCCCCCUcgGCCUCCCgCg -3'
miRNA:   3'- auuAGGGA--GGgGGGGGA--UGGGGGGgG- -5'
29114 5' -64.2 NC_006146.1 + 155606 0.68 0.47587
Target:  5'- ----gCCUCCggCCCCU-CCUCCCCCu -3'
miRNA:   3'- auuagGGAGGggGGGGAuGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 151972 0.73 0.243829
Target:  5'- ---gCCCUUCCCgUCCUcguuACCCCCCaCCa -3'
miRNA:   3'- auuaGGGAGGGGgGGGA----UGGGGGG-GG- -5'
29114 5' -64.2 NC_006146.1 + 150688 0.66 0.592823
Target:  5'- gAAUCCUgcaccaguacaugCCCagCCUCCUGCgCCCCCg -3'
miRNA:   3'- aUUAGGGa------------GGG--GGGGGAUGgGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 149484 0.67 0.501912
Target:  5'- -----gCUCCCCCauggggaCCCUGCCCUCUCUg -3'
miRNA:   3'- auuaggGAGGGGG-------GGGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 149311 0.71 0.31118
Target:  5'- --uUUUCUUgCCCCCUUgAUCCCCCCCu -3'
miRNA:   3'- auuAGGGAGgGGGGGGA-UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 148900 0.66 0.577532
Target:  5'- cAAUCCCUuggggucuugCCCUCCaCCaGCUUCCCCg -3'
miRNA:   3'- aUUAGGGA----------GGGGGG-GGaUGGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 146907 0.7 0.363948
Target:  5'- gAGUUCCUCgcgcguccucuuucgCCCCCUCUccgGCUCCCCCa -3'
miRNA:   3'- aUUAGGGAG---------------GGGGGGGA---UGGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 146716 0.7 0.353504
Target:  5'- ---gCCCagCCCUCCUCUGCCCUgUCCa -3'
miRNA:   3'- auuaGGGa-GGGGGGGGAUGGGGgGGG- -5'
29114 5' -64.2 NC_006146.1 + 144711 0.7 0.338956
Target:  5'- --uUCCCaggccgCCCCCUCCgaccuaAUCCCCUCCa -3'
miRNA:   3'- auuAGGGa-----GGGGGGGGa-----UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 144627 0.67 0.524852
Target:  5'- ---cCCCUCCaCCCaggcuaauuccgccaCCCgUGCCCCCaCCUc -3'
miRNA:   3'- auuaGGGAGG-GGG---------------GGG-AUGGGGG-GGG- -5'
29114 5' -64.2 NC_006146.1 + 141551 0.67 0.502822
Target:  5'- ----gCCUCaCCCCUCaGCCCCCUCUg -3'
miRNA:   3'- auuagGGAGgGGGGGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 138761 0.66 0.593781
Target:  5'- ---gCCCaUCCCCCaCCCcagcACCCCggggugacguggcaCCCCu -3'
miRNA:   3'- auuaGGG-AGGGGG-GGGa---UGGGG--------------GGGG- -5'
29114 5' -64.2 NC_006146.1 + 138721 0.98 0.003709
Target:  5'- ---aUCCUCCCCCCCCUACCCCCCCCu -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 137869 0.66 0.558546
Target:  5'- -uGUCCCgggCCCCgCCCCggGCCggcagggggUCCCCg -3'
miRNA:   3'- auUAGGGa--GGGG-GGGGa-UGG---------GGGGGg -5'
29114 5' -64.2 NC_006146.1 + 137692 0.81 0.067394
Target:  5'- -cAUCCCggcUCCCCCUCCgGCCuCCCCCCg -3'
miRNA:   3'- auUAGGG---AGGGGGGGGaUGG-GGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 137416 0.75 0.160084
Target:  5'- gGGUCCCggggaccacgCCCCUCCCUuCCCgaCCCCCa -3'
miRNA:   3'- aUUAGGGa---------GGGGGGGGAuGGG--GGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.