miRNA display CGI


Results 41 - 60 of 282 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 5' -64.2 NC_006146.1 + 137263 0.76 0.145387
Target:  5'- ---cCCCUCCCUCCCCcACCCCCgUUg -3'
miRNA:   3'- auuaGGGAGGGGGGGGaUGGGGGgGG- -5'
29114 5' -64.2 NC_006146.1 + 137076 0.76 0.145387
Target:  5'- ---cCCCUCCCUCCCCcACCCCCgUUg -3'
miRNA:   3'- auuaGGGAGGGGGGGGaUGGGGGgGG- -5'
29114 5' -64.2 NC_006146.1 + 136884 0.76 0.135184
Target:  5'- cAcgCCCgCCUgCCCCgACCCCCCCCc -3'
miRNA:   3'- aUuaGGGaGGGgGGGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 136814 0.66 0.596656
Target:  5'- gGGUCgCggCUgCCCCCCgggACCCCcggCCCCg -3'
miRNA:   3'- aUUAGgGa-GG-GGGGGGa--UGGGG---GGGG- -5'
29114 5' -64.2 NC_006146.1 + 136350 0.66 0.587079
Target:  5'- ----aCCUCCCCCUCCUgguuuaACCcuauggaggggaCCCUCCu -3'
miRNA:   3'- auuagGGAGGGGGGGGA------UGG------------GGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 134660 0.67 0.493761
Target:  5'- ---gCUCUCCagaagCCgCCCUGCCUCCUCCc -3'
miRNA:   3'- auuaGGGAGGg----GG-GGGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 133238 0.69 0.391768
Target:  5'- ---gCCC-CCagCCCCCCUACCCUCaacaCCa -3'
miRNA:   3'- auuaGGGaGG--GGGGGGAUGGGGGg---GG- -5'
29114 5' -64.2 NC_006146.1 + 131040 0.73 0.238347
Target:  5'- ----gCCUCCUCCCCCgggcacacaGCCCCCgCCg -3'
miRNA:   3'- auuagGGAGGGGGGGGa--------UGGGGGgGG- -5'
29114 5' -64.2 NC_006146.1 + 130997 0.68 0.43263
Target:  5'- ---aCCCUCCUCCgUCguuuCCCgCCCCg -3'
miRNA:   3'- auuaGGGAGGGGGgGGau--GGGgGGGG- -5'
29114 5' -64.2 NC_006146.1 + 130411 0.71 0.304512
Target:  5'- gAGUCCgCUgCCuuucgcggCCCCUCUGCCCCCCUUc -3'
miRNA:   3'- aUUAGG-GA-GG--------GGGGGGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 130059 0.67 0.484776
Target:  5'- ----gCCUCCaagagcgCCCCCUGCCCCUUaCCa -3'
miRNA:   3'- auuagGGAGGg------GGGGGAUGGGGGG-GG- -5'
29114 5' -64.2 NC_006146.1 + 129831 0.71 0.317958
Target:  5'- -uGUCCCUggCCUCCCUCcACCCcgaggCCCCCa -3'
miRNA:   3'- auUAGGGA--GGGGGGGGaUGGG-----GGGGG- -5'
29114 5' -64.2 NC_006146.1 + 129779 0.67 0.521154
Target:  5'- ---cCCCUCCCCCgggaCCCUaaaguggagGCCCUgcacgccuggcuCCCCu -3'
miRNA:   3'- auuaGGGAGGGGG----GGGA---------UGGGG------------GGGG- -5'
29114 5' -64.2 NC_006146.1 + 129594 0.7 0.353504
Target:  5'- --cUCCCUCUgaaaaagCCCCUGCCCCUCaCCg -3'
miRNA:   3'- auuAGGGAGGgg-----GGGGAUGGGGGG-GG- -5'
29114 5' -64.2 NC_006146.1 + 128350 0.66 0.53974
Target:  5'- gAAUUCagcgCCCCCCC-ACCCCCCg- -3'
miRNA:   3'- aUUAGGgag-GGGGGGGaUGGGGGGgg -5'
29114 5' -64.2 NC_006146.1 + 127816 0.68 0.467046
Target:  5'- -uGUCCUgaaaaUCCgCCUCCaGCCUCCCCUg -3'
miRNA:   3'- auUAGGG-----AGGgGGGGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 127319 0.66 0.58708
Target:  5'- ----gCCUCCCgCCCC-GCUCCCCg- -3'
miRNA:   3'- auuagGGAGGGgGGGGaUGGGGGGgg -5'
29114 5' -64.2 NC_006146.1 + 127294 0.73 0.212471
Target:  5'- --cUCCCUCUUCCCCCgACCCgaCCCg -3'
miRNA:   3'- auuAGGGAGGGGGGGGaUGGGggGGG- -5'
29114 5' -64.2 NC_006146.1 + 127260 0.66 0.549118
Target:  5'- ---cCCCUCUCCCCaggcgGCCaCgCCCCg -3'
miRNA:   3'- auuaGGGAGGGGGGgga--UGG-GgGGGG- -5'
29114 5' -64.2 NC_006146.1 + 126883 0.66 0.577532
Target:  5'- ---gCCCUCggCCgCCCCCU-CCCCgCCg -3'
miRNA:   3'- auuaGGGAG--GG-GGGGGAuGGGGgGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.