miRNA display CGI


Results 81 - 100 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 5' -64.2 NC_006146.1 + 113557 0.68 0.441097
Target:  5'- --cUCCCUCaCCgaCaCCCgggGCCCCgCCCCc -3'
miRNA:   3'- auuAGGGAG-GGg-G-GGGa--UGGGG-GGGG- -5'
29114 5' -64.2 NC_006146.1 + 111460 0.66 0.549118
Target:  5'- gAGUCCUgCCCCCugCCCUGCgCCUUCg -3'
miRNA:   3'- aUUAGGGaGGGGG--GGGAUGgGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 110753 0.7 0.360942
Target:  5'- cUAAUCCC-CCuggcacacaCCCCCCacagguCCCuCCCCCg -3'
miRNA:   3'- -AUUAGGGaGG---------GGGGGGau----GGG-GGGGG- -5'
29114 5' -64.2 NC_006146.1 + 109220 0.69 0.424259
Target:  5'- cGGUCCCcaacccgugCCCCCCUCUcUCCaCCUCCu -3'
miRNA:   3'- aUUAGGGa--------GGGGGGGGAuGGG-GGGGG- -5'
29114 5' -64.2 NC_006146.1 + 109064 0.71 0.31118
Target:  5'- gAGUCCCggcaCCagCCCCaCUGCCCCCaCCa -3'
miRNA:   3'- aUUAGGGa---GGg-GGGG-GAUGGGGGgGG- -5'
29114 5' -64.2 NC_006146.1 + 106667 0.69 0.398937
Target:  5'- ---cCCCUCCCgCCCCgGCCCaggcgcagaugugCCUCCu -3'
miRNA:   3'- auuaGGGAGGGgGGGGaUGGG-------------GGGGG- -5'
29114 5' -64.2 NC_006146.1 + 103531 0.66 0.587079
Target:  5'- ---gCCC-CCCUCCCCguacucgugggACCCggaCCCCg -3'
miRNA:   3'- auuaGGGaGGGGGGGGa----------UGGGg--GGGG- -5'
29114 5' -64.2 NC_006146.1 + 102272 0.66 0.558546
Target:  5'- ---cCCCUCguuggucuCCCCgCCaGCCCUCCCUu -3'
miRNA:   3'- auuaGGGAG--------GGGGgGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 101933 0.66 0.596656
Target:  5'- --cUCCCUaucagcggCUCUgCCCUGCCCCCUg- -3'
miRNA:   3'- auuAGGGA--------GGGGgGGGAUGGGGGGgg -5'
29114 5' -64.2 NC_006146.1 + 96178 0.67 0.502821
Target:  5'- gGGUCCCUCCagggCCUuucuggCCCUgagcguaaGCCCCCCUg -3'
miRNA:   3'- aUUAGGGAGG----GGG------GGGA--------UGGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 94521 0.69 0.415985
Target:  5'- cGGUCCCUCCCCCggCgcGCCCUCUCg -3'
miRNA:   3'- aUUAGGGAGGGGGggGa-UGGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 94310 0.67 0.521154
Target:  5'- ---aCCCUCUCCUcgUCCUGCUCggUCCCCa -3'
miRNA:   3'- auuaGGGAGGGGG--GGGAUGGG--GGGGG- -5'
29114 5' -64.2 NC_006146.1 + 93064 0.81 0.060901
Target:  5'- aAGUCCCaCCCCCCCgCcGCCCCCCuCCg -3'
miRNA:   3'- aUUAGGGaGGGGGGG-GaUGGGGGG-GG- -5'
29114 5' -64.2 NC_006146.1 + 84470 0.66 0.558546
Target:  5'- ---cCCCUUCaagCCCagCUGCCCCCCUa -3'
miRNA:   3'- auuaGGGAGGg--GGGg-GAUGGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 81318 0.66 0.577532
Target:  5'- -----aCUCCCaCCCCCaucggcAUCCCCCUCa -3'
miRNA:   3'- auuaggGAGGG-GGGGGa-----UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 81212 0.66 0.53974
Target:  5'- -uAUCCCaggCCgUUCCCCggGCCCCUUCCg -3'
miRNA:   3'- auUAGGGa--GG-GGGGGGa-UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 80855 0.69 0.391768
Target:  5'- --cUCCCUCCagcaccaCCUCCUGCUccaccgcuUCCCCCu -3'
miRNA:   3'- auuAGGGAGGg------GGGGGAUGG--------GGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 80824 0.7 0.360942
Target:  5'- --cUCCaCUgCUCCCCCUGCaCCgCCUCCu -3'
miRNA:   3'- auuAGG-GAgGGGGGGGAUG-GG-GGGGG- -5'
29114 5' -64.2 NC_006146.1 + 80704 0.79 0.086668
Target:  5'- --cUCCuCUUCCCCCUCUGCCCCCUgCa -3'
miRNA:   3'- auuAGG-GAGGGGGGGGAUGGGGGGgG- -5'
29114 5' -64.2 NC_006146.1 + 80672 0.69 0.391768
Target:  5'- ----gCCUCUCCCUCggCUGCCUCCUCCa -3'
miRNA:   3'- auuagGGAGGGGGGG--GAUGGGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.