miRNA display CGI


Results 1 - 20 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 5' -64.2 NC_006146.1 + 34888 1.05 0.001205
Target:  5'- gUAAUCCCUCCCCCCCCUACCCCCCCUc -3'
miRNA:   3'- -AUUAGGGAGGGGGGGGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 162647 0.79 0.084526
Target:  5'- --cUCCCUCCCCCuCCCUACUCUCCa- -3'
miRNA:   3'- auuAGGGAGGGGG-GGGAUGGGGGGgg -5'
29114 5' -64.2 NC_006146.1 + 17003 0.78 0.100646
Target:  5'- ----gCCUCCCCCUCCUcucuCCCUCCCCg -3'
miRNA:   3'- auuagGGAGGGGGGGGAu---GGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 54133 0.66 0.596656
Target:  5'- aGGUCCguggaguaguagCggCCCCCCgUGCCCUCCUCc -3'
miRNA:   3'- aUUAGG------------GagGGGGGGgAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 13662 0.83 0.050967
Target:  5'- --cUCCCUCCUCCCCuCUuCCCCCUCCa -3'
miRNA:   3'- auuAGGGAGGGGGGG-GAuGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 16740 0.83 0.050967
Target:  5'- --cUCCCUCCUCCCCuCUuCCCCCUCCa -3'
miRNA:   3'- auuAGGGAGGGGGGG-GAuGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 22896 0.83 0.050967
Target:  5'- --cUCCCUCCUCCCCuCUuCCCCCUCCa -3'
miRNA:   3'- auuAGGGAGGGGGGG-GAuGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 25973 0.83 0.050967
Target:  5'- --cUCCCUCCUCCCCuCUuCCCCCUCCa -3'
miRNA:   3'- auuAGGGAGGGGGGG-GAuGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 16874 0.81 0.060901
Target:  5'- ----gCCUCCCUCCCCgGCCCCCCUCa -3'
miRNA:   3'- auuagGGAGGGGGGGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 137692 0.81 0.067394
Target:  5'- -cAUCCCggcUCCCCCUCCgGCCuCCCCCCg -3'
miRNA:   3'- auUAGGG---AGGGGGGGGaUGG-GGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 26107 0.81 0.060901
Target:  5'- ----gCCUCCCUCCCCgGCCCCCCUCa -3'
miRNA:   3'- auuagGGAGGGGGGGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 13796 0.81 0.060901
Target:  5'- ----gCCUCCCUCCCCgGCCCCCCUCa -3'
miRNA:   3'- auuagGGAGGGGGGGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 138721 0.98 0.003709
Target:  5'- ---aUCCUCCCCCCCCUACCCCCCCCu -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 29185 0.81 0.060901
Target:  5'- ----gCCUCCCUCCCCgGCCCCCCUCa -3'
miRNA:   3'- auuagGGAGGGGGGGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 55864 0.84 0.040487
Target:  5'- ---cCCCUCCUCCUCCUACUCCCCCUc -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 29051 0.83 0.050967
Target:  5'- --cUCCCUCCUCCCCuCUuCCCCCUCCa -3'
miRNA:   3'- auuAGGGAGGGGGGG-GAuGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 93064 0.81 0.060901
Target:  5'- aAGUCCCaCCCCCCCgCcGCCCCCCuCCg -3'
miRNA:   3'- aUUAGGGaGGGGGGG-GaUGGGGGG-GG- -5'
29114 5' -64.2 NC_006146.1 + 13926 0.78 0.100646
Target:  5'- ----gCCUCCCCCUCCUcucuCCCUCCCCg -3'
miRNA:   3'- auuagGGAGGGGGGGGAu---GGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 167122 0.83 0.046018
Target:  5'- ---gCCCcCCCCCCCCccCCCCCCCCg -3'
miRNA:   3'- auuaGGGaGGGGGGGGauGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 19818 0.83 0.050967
Target:  5'- --cUCCCUCCUCCCCuCUuCCCCCUCCa -3'
miRNA:   3'- auuAGGGAGGGGGGG-GAuGGGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.