miRNA display CGI


Results 41 - 60 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 5' -64.2 NC_006146.1 + 31264 0.74 0.184644
Target:  5'- ----gCCUCCUCCUCCUcaacacauGCCUCCCCCa -3'
miRNA:   3'- auuagGGAGGGGGGGGA--------UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 162647 0.79 0.084526
Target:  5'- --cUCCCUCCCCCuCCCUACUCUCCa- -3'
miRNA:   3'- auuAGGGAGGGGG-GGGAUGGGGGGgg -5'
29114 5' -64.2 NC_006146.1 + 55864 0.84 0.040487
Target:  5'- ---cCCCUCCUCCUCCUACUCCCCCUc -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 19952 0.76 0.156289
Target:  5'- ----gCCUCCCUCCCg-GCCCCCCUCa -3'
miRNA:   3'- auuagGGAGGGGGGGgaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 138721 0.98 0.003709
Target:  5'- ---aUCCUCCCCCCCCUACCCCCCCCu -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 16769 0.72 0.255106
Target:  5'- cAGUCCC-CCCCCCCCgcuuucgGCCUCUCg- -3'
miRNA:   3'- aUUAGGGaGGGGGGGGa------UGGGGGGgg -5'
29114 5' -64.2 NC_006146.1 + 13662 0.83 0.050967
Target:  5'- --cUCCCUCCUCCCCuCUuCCCCCUCCa -3'
miRNA:   3'- auuAGGGAGGGGGGG-GAuGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 29461 0.72 0.249415
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCuCCCCg -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGG-GGGG- -5'
29114 5' -64.2 NC_006146.1 + 20227 0.72 0.249415
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCuCCCCg -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGG-GGGG- -5'
29114 5' -64.2 NC_006146.1 + 29573 0.73 0.22252
Target:  5'- aGGUgCCCUCUgagCCCCCUUugCCCCCUg -3'
miRNA:   3'- aUUA-GGGAGG---GGGGGGAugGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 20339 0.73 0.22252
Target:  5'- aGGUgCCCUCUgagCCCCCUUugCCCCCUg -3'
miRNA:   3'- aUUA-GGGAGG---GGGGGGAugGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 127294 0.73 0.212471
Target:  5'- --cUCCCUCUUCCCCCgACCCgaCCCg -3'
miRNA:   3'- auuAGGGAGGGGGGGGaUGGGggGGG- -5'
29114 5' -64.2 NC_006146.1 + 166036 0.74 0.202816
Target:  5'- gGGUgCCUguggcCCCCgCCCCUGCCCCuauuCCCCu -3'
miRNA:   3'- aUUAgGGA-----GGGG-GGGGAUGGGG----GGGG- -5'
29114 5' -64.2 NC_006146.1 + 24837 0.76 0.145387
Target:  5'- ---cUCCUCUCCUCCCUGCCUUCCCUc -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 15603 0.76 0.145387
Target:  5'- ---cUCCUCUCCUCCCUGCCUUCCCUc -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 26237 0.78 0.100646
Target:  5'- ----gCCUCCCCCUCCUcucuCCCUCCCCg -3'
miRNA:   3'- auuagGGAGGGGGGGGAu---GGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 17003 0.78 0.100646
Target:  5'- ----gCCUCCCCCUCCUcucuCCCUCCCCg -3'
miRNA:   3'- auuagGGAGGGGGGGGAu---GGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 29185 0.81 0.060901
Target:  5'- ----gCCUCCCUCCCCgGCCCCCCUCa -3'
miRNA:   3'- auuagGGAGGGGGGGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 16874 0.81 0.060901
Target:  5'- ----gCCUCCCUCCCCgGCCCCCCUCa -3'
miRNA:   3'- auuagGGAGGGGGGGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 22896 0.83 0.050967
Target:  5'- --cUCCCUCCUCCCCuCUuCCCCCUCCa -3'
miRNA:   3'- auuAGGGAGGGGGGG-GAuGGGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.