miRNA display CGI


Results 61 - 80 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 5' -64.2 NC_006146.1 + 166036 0.74 0.202816
Target:  5'- gGGUgCCUguggcCCCCgCCCCUGCCCCuauuCCCCu -3'
miRNA:   3'- aUUAgGGA-----GGGG-GGGGAUGGGG----GGGG- -5'
29114 5' -64.2 NC_006146.1 + 14183 0.73 0.22252
Target:  5'- aGGUgCCCUCUgagCCCCCUUugCCCCCUg -3'
miRNA:   3'- aUUA-GGGAGG---GGGGGGAugGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 16740 0.83 0.050967
Target:  5'- --cUCCCUCCUCCCCuCUuCCCCCUCCa -3'
miRNA:   3'- auuAGGGAGGGGGGG-GAuGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 25973 0.83 0.050967
Target:  5'- --cUCCCUCCUCCCCuCUuCCCCCUCCa -3'
miRNA:   3'- auuAGGGAGGGGGGG-GAuGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 23029 0.81 0.060901
Target:  5'- ----gCCUCCCUCCCCgGCCCCCCUCa -3'
miRNA:   3'- auuagGGAGGGGGGGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 93064 0.81 0.060901
Target:  5'- aAGUCCCaCCCCCCCgCcGCCCCCCuCCg -3'
miRNA:   3'- aUUAGGGaGGGGGGG-GaUGGGGGG-GG- -5'
29114 5' -64.2 NC_006146.1 + 20081 0.78 0.100646
Target:  5'- ----gCCUCCCCCUCCUcucuCCCUCCCCg -3'
miRNA:   3'- auuagGGAGGGGGGGGAu---GGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 29315 0.78 0.100646
Target:  5'- ----gCCUCCCCCUCCUcucuCCCUCCCCg -3'
miRNA:   3'- auuagGGAGGGGGGGGAu---GGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 18681 0.76 0.145387
Target:  5'- ---cUCCUCUCCUCCCUGCCUUCCCUc -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 27915 0.76 0.145387
Target:  5'- ---cUCCUCUCCUCCCUGCCUUCCCUc -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 42453 0.7 0.350559
Target:  5'- aGGUCCCgcUCCCCCUCCcgcccggUcugcggcccggaucACCCUCCCCu -3'
miRNA:   3'- aUUAGGG--AGGGGGGGG-------A--------------UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 48296 0.71 0.317958
Target:  5'- ---cUCCUCCgCCCCUcGCCCUCCaCCg -3'
miRNA:   3'- auuaGGGAGGgGGGGGaUGGGGGG-GG- -5'
29114 5' -64.2 NC_006146.1 + 26495 0.73 0.22252
Target:  5'- aGGUgCCCUCUgagCCCCCUUugCCCCCUg -3'
miRNA:   3'- aUUA-GGGAGG---GGGGGGAugGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 151972 0.73 0.243829
Target:  5'- ---gCCCUUCCCgUCCUcguuACCCCCCaCCa -3'
miRNA:   3'- auuaGGGAGGGGgGGGA----UGGGGGG-GG- -5'
29114 5' -64.2 NC_006146.1 + 29461 0.72 0.249415
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCuCCCCg -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGG-GGGG- -5'
29114 5' -64.2 NC_006146.1 + 16769 0.72 0.255106
Target:  5'- cAGUCCC-CCCCCCCCgcuuucgGCCUCUCg- -3'
miRNA:   3'- aUUAGGGaGGGGGGGGa------UGGGGGGgg -5'
29114 5' -64.2 NC_006146.1 + 29080 0.72 0.255106
Target:  5'- cAGUCCC-CCCCCCCCgcuuucgGCCUCUCg- -3'
miRNA:   3'- aUUAGGGaGGGGGGGGa------UGGGGGGgg -5'
29114 5' -64.2 NC_006146.1 + 18702 0.72 0.278939
Target:  5'- --nUCCCUCUcuguCCUCCCcGCCUCUCCCa -3'
miRNA:   3'- auuAGGGAGG----GGGGGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 125497 0.71 0.297954
Target:  5'- gUAGUUuuUCCaaCCCCCggaGCCCCCUCCa -3'
miRNA:   3'- -AUUAGggAGGg-GGGGGa--UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 42795 0.71 0.31118
Target:  5'- --cUCCUggacgccauugUCCCCUgCCUcgGCCCCUCCCg -3'
miRNA:   3'- auuAGGG-----------AGGGGGgGGA--UGGGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.