miRNA display CGI


Results 81 - 100 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 5' -64.2 NC_006146.1 + 17149 0.72 0.249415
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCuCCCCg -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGG-GGGG- -5'
29114 5' -64.2 NC_006146.1 + 22925 0.72 0.249415
Target:  5'- cAGUCCC-CCCCCCCCgcuuucgGCCUCUcggUCCa -3'
miRNA:   3'- aUUAGGGaGGGGGGGGa------UGGGGG---GGG- -5'
29114 5' -64.2 NC_006146.1 + 19847 0.72 0.255106
Target:  5'- cAGUCCC-CCCCCCCCgcuuucgGCCUCUCg- -3'
miRNA:   3'- aUUAGGGaGGGGGGGGa------UGGGGGGgg -5'
29114 5' -64.2 NC_006146.1 + 12545 0.72 0.278939
Target:  5'- --nUCCCUCUcuguCCUCCCcGCCUCUCCCa -3'
miRNA:   3'- auuAGGGAGG----GGGGGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 21780 0.72 0.278939
Target:  5'- --nUCCCUCUcuguCCUCCCcGCCUCUCCCa -3'
miRNA:   3'- auuAGGGAGG----GGGGGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 42795 0.71 0.31118
Target:  5'- --cUCCUggacgccauugUCCCCUgCCUcgGCCCCUCCCg -3'
miRNA:   3'- auuAGGG-----------AGGGGGgGGA--UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 129831 0.71 0.317958
Target:  5'- -uGUCCCUggCCUCCCUCcACCCcgaggCCCCCa -3'
miRNA:   3'- auUAGGGA--GGGGGGGGaUGGG-----GGGGG- -5'
29114 5' -64.2 NC_006146.1 + 31264 0.74 0.184644
Target:  5'- ----gCCUCCUCCUCCUcaacacauGCCUCCCCCa -3'
miRNA:   3'- auuagGGAGGGGGGGGA--------UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 27915 0.76 0.145387
Target:  5'- ---cUCCUCUCCUCCCUGCCUUCCCUc -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 15603 0.76 0.145387
Target:  5'- ---cUCCUCUCCUCCCUGCCUUCCCUc -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 146907 0.7 0.363948
Target:  5'- gAGUUCCUCgcgcguccucuuucgCCCCCUCUccgGCUCCCCCa -3'
miRNA:   3'- aUUAGGGAG---------------GGGGGGGA---UGGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 45194 0.69 0.391768
Target:  5'- ---cCCCUCCUcaucuuCCUCCgucuCCCCUCCCg -3'
miRNA:   3'- auuaGGGAGGG------GGGGGau--GGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 120166 0.69 0.415985
Target:  5'- ---cCCCUUCCCgacgCCCCgucGCCCCCgCUCa -3'
miRNA:   3'- auuaGGGAGGGG----GGGGa--UGGGGG-GGG- -5'
29114 5' -64.2 NC_006146.1 + 167224 0.69 0.424259
Target:  5'- ---gCCUUCCCCCgUCUGCUCCCgCg -3'
miRNA:   3'- auuaGGGAGGGGGgGGAUGGGGGgGg -5'
29114 5' -64.2 NC_006146.1 + 170020 0.69 0.424259
Target:  5'- ---gCCUUCCCCCgUCUGCUCCCgCg -3'
miRNA:   3'- auuaGGGAGGGGGgGGAUGGGGGgGg -5'
29114 5' -64.2 NC_006146.1 + 25973 0.83 0.050967
Target:  5'- --cUCCCUCCUCCCCuCUuCCCCCUCCa -3'
miRNA:   3'- auuAGGGAGGGGGGG-GAuGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 16874 0.81 0.060901
Target:  5'- ----gCCUCCCUCCCCgGCCCCCCUCa -3'
miRNA:   3'- auuagGGAGGGGGGGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 93064 0.81 0.060901
Target:  5'- aAGUCCCaCCCCCCCgCcGCCCCCCuCCg -3'
miRNA:   3'- aUUAGGGaGGGGGGG-GaUGGGGGG-GG- -5'
29114 5' -64.2 NC_006146.1 + 13926 0.78 0.100646
Target:  5'- ----gCCUCCCCCUCCUcucuCCCUCCCCg -3'
miRNA:   3'- auuagGGAGGGGGGGGAu---GGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 29315 0.78 0.100646
Target:  5'- ----gCCUCCCCCUCCUcucuCCCUCCCCg -3'
miRNA:   3'- auuagGGAGGGGGGGGAu---GGGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.