miRNA display CGI


Results 101 - 120 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 5' -64.2 NC_006146.1 + 78803 0.69 0.427596
Target:  5'- ---gCCCgCCCCCCagcagcagccccaggCCggGCCgCCCCCCg -3'
miRNA:   3'- auuaGGGaGGGGGG---------------GGa-UGG-GGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 31528 0.68 0.461792
Target:  5'- --uUCuCCUacuaaacagcaggcaCCCCCCCCggcGCCgCCCCUa -3'
miRNA:   3'- auuAG-GGA---------------GGGGGGGGa--UGGgGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 33496 0.68 0.467046
Target:  5'- gUGGUCCCcgggaCCCCagcaCCCUcccgGCCUCCCUCc -3'
miRNA:   3'- -AUUAGGGa----GGGGg---GGGA----UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 31377 0.68 0.469684
Target:  5'- ---cCCCUuggcccccauacagaCCUCCUCCUACuaaacaccaggcaCCCCCCCg -3'
miRNA:   3'- auuaGGGA---------------GGGGGGGGAUG-------------GGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 155606 0.68 0.47587
Target:  5'- ----gCCUCCggCCCCU-CCUCCCCCu -3'
miRNA:   3'- auuagGGAGGggGGGGAuGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 146716 0.7 0.353504
Target:  5'- ---gCCCagCCCUCCUCUGCCCUgUCCa -3'
miRNA:   3'- auuaGGGa-GGGGGGGGAUGGGGgGGG- -5'
29114 5' -64.2 NC_006146.1 + 159087 0.7 0.346175
Target:  5'- gGGUCCCaccUUCCCCUCCUGcaggguCCCCagCCCCu -3'
miRNA:   3'- aUUAGGG---AGGGGGGGGAU------GGGG--GGGG- -5'
29114 5' -64.2 NC_006146.1 + 21759 0.76 0.145387
Target:  5'- ---cUCCUCUCCUCCCUGCCUUCCCUc -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 61052 0.76 0.156289
Target:  5'- --cUCCCUCCCCUCUauggcacACCaCCCCCCa -3'
miRNA:   3'- auuAGGGAGGGGGGGga-----UGG-GGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 166036 0.74 0.202816
Target:  5'- gGGUgCCUguggcCCCCgCCCCUGCCCCuauuCCCCu -3'
miRNA:   3'- aUUAgGGA-----GGGG-GGGGAUGGGG----GGGG- -5'
29114 5' -64.2 NC_006146.1 + 127294 0.73 0.212471
Target:  5'- --cUCCCUCUUCCCCCgACCCgaCCCg -3'
miRNA:   3'- auuAGGGAGGGGGGGGaUGGGggGGG- -5'
29114 5' -64.2 NC_006146.1 + 23417 0.73 0.22252
Target:  5'- aGGUgCCCUCUgagCCCCCUUugCCCCCUg -3'
miRNA:   3'- aUUA-GGGAGG---GGGGGGAugGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 131040 0.73 0.238347
Target:  5'- ----gCCUCCUCCCCCgggcacacaGCCCCCgCCg -3'
miRNA:   3'- auuagGGAGGGGGGGGa--------UGGGGGgGG- -5'
29114 5' -64.2 NC_006146.1 + 20227 0.72 0.249415
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCuCCCCg -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGG-GGGG- -5'
29114 5' -64.2 NC_006146.1 + 29461 0.72 0.249415
Target:  5'- --cUCCCUggCCaCUCCCC-ACCCCuCCCCg -3'
miRNA:   3'- auuAGGGA--GG-GGGGGGaUGGGG-GGGG- -5'
29114 5' -64.2 NC_006146.1 + 27936 0.72 0.255106
Target:  5'- --nUCCCUCUcguCCUCCCcGCCUCUCCCa -3'
miRNA:   3'- auuAGGGAGG---GGGGGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 15624 0.72 0.278939
Target:  5'- --nUCCCUCUcuguCCUCCCcGCCUCUCCCa -3'
miRNA:   3'- auuAGGGAGG----GGGGGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 33853 0.71 0.296656
Target:  5'- gUGGUCCCcggaaccccaggCCCCCaCCCgGCCUCCUCCc -3'
miRNA:   3'- -AUUAGGGa-----------GGGGG-GGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 130411 0.71 0.304512
Target:  5'- gAGUCCgCUgCCuuucgcggCCCCUCUGCCCCCCUUc -3'
miRNA:   3'- aUUAGG-GA-GG--------GGGGGGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 129831 0.71 0.317958
Target:  5'- -uGUCCCUggCCUCCCUCcACCCcgaggCCCCCa -3'
miRNA:   3'- auUAGGGA--GGGGGGGGaUGGG-----GGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.