miRNA display CGI


Results 41 - 60 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 5' -64.2 NC_006146.1 + 44875 0.66 0.577532
Target:  5'- cAGUCCCUCCCggCCCagcagcagaagCCcACCgCCCCa -3'
miRNA:   3'- aUUAGGGAGGG--GGG-----------GGaUGGgGGGGg -5'
29114 5' -64.2 NC_006146.1 + 37928 0.66 0.581347
Target:  5'- cGGUCuCCaCCgCCCCCCgaggACCCagagauaauccaccaCCCCCc -3'
miRNA:   3'- aUUAG-GGaGG-GGGGGGa---UGGG---------------GGGGG- -5'
29114 5' -64.2 NC_006146.1 + 103531 0.66 0.587079
Target:  5'- ---gCCC-CCCUCCCCguacucgugggACCCggaCCCCg -3'
miRNA:   3'- auuaGGGaGGGGGGGGa----------UGGGg--GGGG- -5'
29114 5' -64.2 NC_006146.1 + 136350 0.66 0.587079
Target:  5'- ----aCCUCCCCCUCCUgguuuaACCcuauggaggggaCCCUCCu -3'
miRNA:   3'- auuagGGAGGGGGGGGA------UGG------------GGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 136814 0.66 0.596656
Target:  5'- gGGUCgCggCUgCCCCCCgggACCCCcggCCCCg -3'
miRNA:   3'- aUUAGgGa-GG-GGGGGGa--UGGGG---GGGG- -5'
29114 5' -64.2 NC_006146.1 + 54090 0.66 0.558546
Target:  5'- cGcgCUCUUggaCCCUaaCCUGCuCCCCCCCg -3'
miRNA:   3'- aUuaGGGAGg--GGGG--GGAUG-GGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 5125 0.66 0.549118
Target:  5'- ---cCCCUUCCCUUCCUGCaaccaCCUaCCCa -3'
miRNA:   3'- auuaGGGAGGGGGGGGAUGg----GGG-GGG- -5'
29114 5' -64.2 NC_006146.1 + 3467 0.68 0.467046
Target:  5'- ---gCCCgCCCgaCCCCCcGCCCCgggaCCCCg -3'
miRNA:   3'- auuaGGGaGGG--GGGGGaUGGGG----GGGG- -5'
29114 5' -64.2 NC_006146.1 + 4122 0.68 0.467046
Target:  5'- ---gCCCUuuucaaacUCCCCUCCUGgUCCCCUCg -3'
miRNA:   3'- auuaGGGA--------GGGGGGGGAUgGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 127816 0.68 0.467046
Target:  5'- -uGUCCUgaaaaUCCgCCUCCaGCCUCCCCUg -3'
miRNA:   3'- auUAGGG-----AGGgGGGGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 75444 0.68 0.47587
Target:  5'- --cUCUCagagCCCCCCuuCCUGCCCUUCUCg -3'
miRNA:   3'- auuAGGGa---GGGGGG--GGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 4160 0.68 0.479422
Target:  5'- cUGGUCCCguccgaaacccaugCCCauuggcucaaCCCCUcacACCCCCCUCc -3'
miRNA:   3'- -AUUAGGGa-------------GGGg---------GGGGA---UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 119373 0.67 0.493761
Target:  5'- -cAUCCCUCacagcccaaCUCCCaaACCCCCgCCa -3'
miRNA:   3'- auUAGGGAGg--------GGGGGgaUGGGGGgGG- -5'
29114 5' -64.2 NC_006146.1 + 96178 0.67 0.502821
Target:  5'- gGGUCCCUCCagggCCUuucuggCCCUgagcguaaGCCCCCCUg -3'
miRNA:   3'- aUUAGGGAGG----GGG------GGGA--------UGGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 39274 0.67 0.511953
Target:  5'- -uAUCCCggCCacuaccaucaCCCCCaCUACCacagCCCCCa -3'
miRNA:   3'- auUAGGGa-GG----------GGGGG-GAUGGg---GGGGG- -5'
29114 5' -64.2 NC_006146.1 + 168311 0.67 0.511953
Target:  5'- --uUCCCUCUCCCUauucgACgCCCUCCa -3'
miRNA:   3'- auuAGGGAGGGGGGgga--UGgGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 54595 0.67 0.521153
Target:  5'- -uGUgCCUCCUUCCugaCCUGCCCCacauucaCCCg -3'
miRNA:   3'- auUAgGGAGGGGGG---GGAUGGGGg------GGG- -5'
29114 5' -64.2 NC_006146.1 + 75939 0.67 0.521153
Target:  5'- uUAAUgCCUggcugcacaCCCCCCUCUACCgcagcggccacgUCCCCUg -3'
miRNA:   3'- -AUUAgGGA---------GGGGGGGGAUGG------------GGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 81212 0.66 0.53974
Target:  5'- -uAUCCCaggCCgUUCCCCggGCCCCUUCCg -3'
miRNA:   3'- auUAGGGa--GG-GGGGGGa-UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 128350 0.66 0.53974
Target:  5'- gAAUUCagcgCCCCCCC-ACCCCCCg- -3'
miRNA:   3'- aUUAGGgag-GGGGGGGaUGGGGGGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.