miRNA display CGI


Results 61 - 80 of 282 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 5' -64.2 NC_006146.1 + 54595 0.67 0.521153
Target:  5'- -uGUgCCUCCUUCCugaCCUGCCCCacauucaCCCg -3'
miRNA:   3'- auUAgGGAGGGGGG---GGAUGGGGg------GGG- -5'
29114 5' -64.2 NC_006146.1 + 168311 0.67 0.511953
Target:  5'- --uUCCCUCUCCCUauucgACgCCCUCCa -3'
miRNA:   3'- auuAGGGAGGGGGGgga--UGgGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 672 0.68 0.467046
Target:  5'- ---gCCCgCCCgaCCCCCcGCCCCgggaCCCCg -3'
miRNA:   3'- auuaGGGaGGG--GGGGGaUGGGG----GGGG- -5'
29114 5' -64.2 NC_006146.1 + 3168 0.68 0.458307
Target:  5'- cAAUCgCCgcgCCCCCUCagGCCCCaCCCg -3'
miRNA:   3'- aUUAG-GGa--GGGGGGGgaUGGGGgGGG- -5'
29114 5' -64.2 NC_006146.1 + 2236 0.68 0.458307
Target:  5'- cAAUCgCCgcgCCCCCUCagGCCCCaCCCg -3'
miRNA:   3'- aUUAG-GGa--GGGGGGGgaUGGGGgGGG- -5'
29114 5' -64.2 NC_006146.1 + 1304 0.68 0.458307
Target:  5'- cAAUCgCCgcgCCCCCUCagGCCCCaCCCg -3'
miRNA:   3'- aUUAG-GGa--GGGGGGGgaUGGGGgGGG- -5'
29114 5' -64.2 NC_006146.1 + 113853 0.68 0.458307
Target:  5'- ---cCCCUCCCgCCUCaACCCUggcggcuucgCCCCg -3'
miRNA:   3'- auuaGGGAGGGgGGGGaUGGGG----------GGGG- -5'
29114 5' -64.2 NC_006146.1 + 119220 0.68 0.449657
Target:  5'- cGAUCagcCCCCgCCCCgucGCCCCCCUUc -3'
miRNA:   3'- aUUAGggaGGGG-GGGGa--UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 42034 0.68 0.448796
Target:  5'- ----gCCUCCgCCCCCUcuucgugGCCCUUCCUg -3'
miRNA:   3'- auuagGGAGGgGGGGGA-------UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 14372 0.68 0.441097
Target:  5'- gGGUCCCgggaucUCgCCUCCCgcUCCCCUCCg -3'
miRNA:   3'- aUUAGGG------AGgGGGGGGauGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 1603 0.68 0.467046
Target:  5'- ---gCCCgCCCgaCCCCCcGCCCCgggaCCCCg -3'
miRNA:   3'- auuaGGGaGGG--GGGGGaUGGGG----GGGG- -5'
29114 5' -64.2 NC_006146.1 + 2535 0.68 0.467046
Target:  5'- ---gCCCgCCCgaCCCCCcGCCCCgggaCCCCg -3'
miRNA:   3'- auuaGGGaGGG--GGGGGaUGGGG----GGGG- -5'
29114 5' -64.2 NC_006146.1 + 39274 0.67 0.511953
Target:  5'- -uAUCCCggCCacuaccaucaCCCCCaCUACCacagCCCCCa -3'
miRNA:   3'- auUAGGGa-GG----------GGGGG-GAUGGg---GGGGG- -5'
29114 5' -64.2 NC_006146.1 + 96178 0.67 0.502821
Target:  5'- gGGUCCCUCCagggCCUuucuggCCCUgagcguaaGCCCCCCUg -3'
miRNA:   3'- aUUAGGGAGG----GGG------GGGA--------UGGGGGGGg -5'
29114 5' -64.2 NC_006146.1 + 119373 0.67 0.493761
Target:  5'- -cAUCCCUCacagcccaaCUCCCaaACCCCCgCCa -3'
miRNA:   3'- auUAGGGAGg--------GGGGGgaUGGGGGgGG- -5'
29114 5' -64.2 NC_006146.1 + 4160 0.68 0.479422
Target:  5'- cUGGUCCCguccgaaacccaugCCCauuggcucaaCCCCUcacACCCCCCUCc -3'
miRNA:   3'- -AUUAGGGa-------------GGGg---------GGGGA---UGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 75444 0.68 0.47587
Target:  5'- --cUCUCagagCCCCCCuuCCUGCCCUUCUCg -3'
miRNA:   3'- auuAGGGa---GGGGGG--GGAUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 127816 0.68 0.467046
Target:  5'- -uGUCCUgaaaaUCCgCCUCCaGCCUCCCCUg -3'
miRNA:   3'- auUAGGG-----AGGgGGGGGaUGGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 4122 0.68 0.467046
Target:  5'- ---gCCCUuuucaaacUCCCCUCCUGgUCCCCUCg -3'
miRNA:   3'- auuaGGGA--------GGGGGGGGAUgGGGGGGG- -5'
29114 5' -64.2 NC_006146.1 + 3467 0.68 0.467046
Target:  5'- ---gCCCgCCCgaCCCCCcGCCCCgggaCCCCg -3'
miRNA:   3'- auuaGGGaGGG--GGGGGaUGGGG----GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.