Results 81 - 100 of 282 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29114 | 5' | -64.2 | NC_006146.1 | + | 3019 | 0.69 | 0.424259 |
Target: 5'- gGGUCCCcgggCCgCCCCgggGCUCCCCCg -3' miRNA: 3'- aUUAGGGa---GGgGGGGga-UGGGGGGGg -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 2087 | 0.69 | 0.424259 |
Target: 5'- gGGUCCCcgggCCgCCCCgggGCUCCCCCg -3' miRNA: 3'- aUUAGGGa---GGgGGGGga-UGGGGGGGg -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 1155 | 0.69 | 0.424259 |
Target: 5'- gGGUCCCcgggCCgCCCCgggGCUCCCCCg -3' miRNA: 3'- aUUAGGGa---GGgGGGGga-UGGGGGGGg -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 20170 | 0.69 | 0.415985 |
Target: 5'- aGAUCCCUCgCCUCUUUGCagagggCCCCCg -3' miRNA: 3'- aUUAGGGAGgGGGGGGAUGgg----GGGGG- -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 51915 | 0.69 | 0.415985 |
Target: 5'- --cUUCCUCCCCCCa--GCUCCUCCUu -3' miRNA: 3'- auuAGGGAGGGGGGggaUGGGGGGGG- -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 14372 | 0.68 | 0.441097 |
Target: 5'- gGGUCCCgggaucUCgCCUCCCgcUCCCCUCCg -3' miRNA: 3'- aUUAGGG------AGgGGGGGGauGGGGGGGG- -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 42034 | 0.68 | 0.448796 |
Target: 5'- ----gCCUCCgCCCCCUcuucgugGCCCUUCCUg -3' miRNA: 3'- auuagGGAGGgGGGGGA-------UGGGGGGGG- -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 119220 | 0.68 | 0.449657 |
Target: 5'- cGAUCagcCCCCgCCCCgucGCCCCCCUUc -3' miRNA: 3'- aUUAGggaGGGG-GGGGa--UGGGGGGGG- -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 127816 | 0.68 | 0.467046 |
Target: 5'- -uGUCCUgaaaaUCCgCCUCCaGCCUCCCCUg -3' miRNA: 3'- auUAGGG-----AGGgGGGGGaUGGGGGGGG- -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 4122 | 0.68 | 0.467046 |
Target: 5'- ---gCCCUuuucaaacUCCCCUCCUGgUCCCCUCg -3' miRNA: 3'- auuaGGGA--------GGGGGGGGAUgGGGGGGG- -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 3467 | 0.68 | 0.467046 |
Target: 5'- ---gCCCgCCCgaCCCCCcGCCCCgggaCCCCg -3' miRNA: 3'- auuaGGGaGGG--GGGGGaUGGGG----GGGG- -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 2535 | 0.68 | 0.467046 |
Target: 5'- ---gCCCgCCCgaCCCCCcGCCCCgggaCCCCg -3' miRNA: 3'- auuaGGGaGGG--GGGGGaUGGGG----GGGG- -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 1603 | 0.68 | 0.467046 |
Target: 5'- ---gCCCgCCCgaCCCCCcGCCCCgggaCCCCg -3' miRNA: 3'- auuaGGGaGGG--GGGGGaUGGGG----GGGG- -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 672 | 0.68 | 0.467046 |
Target: 5'- ---gCCCgCCCgaCCCCCcGCCCCgggaCCCCg -3' miRNA: 3'- auuaGGGaGGG--GGGGGaUGGGG----GGGG- -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 3168 | 0.68 | 0.458307 |
Target: 5'- cAAUCgCCgcgCCCCCUCagGCCCCaCCCg -3' miRNA: 3'- aUUAG-GGa--GGGGGGGgaUGGGGgGGG- -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 2236 | 0.68 | 0.458307 |
Target: 5'- cAAUCgCCgcgCCCCCUCagGCCCCaCCCg -3' miRNA: 3'- aUUAG-GGa--GGGGGGGgaUGGGGgGGG- -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 1304 | 0.68 | 0.458307 |
Target: 5'- cAAUCgCCgcgCCCCCUCagGCCCCaCCCg -3' miRNA: 3'- aUUAG-GGa--GGGGGGGgaUGGGGgGGG- -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 113853 | 0.68 | 0.458307 |
Target: 5'- ---cCCCUCCCgCCUCaACCCUggcggcuucgCCCCg -3' miRNA: 3'- auuaGGGAGGGgGGGGaUGGGG----------GGGG- -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 54133 | 0.66 | 0.596656 |
Target: 5'- aGGUCCguggaguaguagCggCCCCCCgUGCCCUCCUCc -3' miRNA: 3'- aUUAGG------------GagGGGGGGgAUGGGGGGGG- -5' |
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29114 | 5' | -64.2 | NC_006146.1 | + | 138721 | 0.98 | 0.003709 |
Target: 5'- ---aUCCUCCCCCCCCUACCCCCCCCu -3' miRNA: 3'- auuaGGGAGGGGGGGGAUGGGGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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