miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29115 3' -62.2 NC_006146.1 + 46859 0.66 0.704538
Target:  5'- uCAGUACaCUGGGGccaUGACGcgcaauuuucuccugGGCACCUa -3'
miRNA:   3'- -GUCGUGgGGCCCC---ACUGCa--------------CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 122854 0.66 0.703588
Target:  5'- -cGCugCCCGGGGcgcugGACGacccGaGCcgGCCCg -3'
miRNA:   3'- guCGugGGGCCCCa----CUGCa---C-CG--UGGG- -5'
29115 3' -62.2 NC_006146.1 + 96154 0.66 0.703588
Target:  5'- uGGCcCCCCGGaGGcUGGCucacUGGguCCCu -3'
miRNA:   3'- gUCGuGGGGCC-CC-ACUGc---ACCguGGG- -5'
29115 3' -62.2 NC_006146.1 + 34153 0.66 0.703588
Target:  5'- cCGGaGCCCCGgcgaGGGUGGgGgGuGCGCCCc -3'
miRNA:   3'- -GUCgUGGGGC----CCCACUgCaC-CGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 167192 0.66 0.694061
Target:  5'- -cGCGCgCCCGGGGUcccGGgGggcGGCGCgCg -3'
miRNA:   3'- guCGUG-GGGCCCCA---CUgCa--CCGUGgG- -5'
29115 3' -62.2 NC_006146.1 + 166027 0.66 0.694061
Target:  5'- gGGCA-UCgGGGGUGcCuGUGGCcCCCg -3'
miRNA:   3'- gUCGUgGGgCCCCACuG-CACCGuGGG- -5'
29115 3' -62.2 NC_006146.1 + 168124 0.66 0.694061
Target:  5'- -cGCGCgCCCGGGGUcccGGgGggcGGCGCgCg -3'
miRNA:   3'- guCGUG-GGGCCCCA---CUgCa--CCGUGgG- -5'
29115 3' -62.2 NC_006146.1 + 169056 0.66 0.694061
Target:  5'- -cGCGCgCCCGGGGUcccGGgGggcGGCGCgCg -3'
miRNA:   3'- guCGUG-GGGCCCCA---CUgCa--CCGUGgG- -5'
29115 3' -62.2 NC_006146.1 + 169988 0.66 0.694061
Target:  5'- -cGCGCgCCCGGGGUcccGGgGggcGGCGCgCg -3'
miRNA:   3'- guCGUG-GGGCCCCA---CUgCa--CCGUGgG- -5'
29115 3' -62.2 NC_006146.1 + 137210 0.66 0.694061
Target:  5'- gGGCacACCCCGGGGagGAagcCGggugGGgGCCUg -3'
miRNA:   3'- gUCG--UGGGGCCCCa-CU---GCa---CCgUGGG- -5'
29115 3' -62.2 NC_006146.1 + 137023 0.66 0.694061
Target:  5'- gGGCacACCCCGGGGagGAggcCGggugGGgGCCUg -3'
miRNA:   3'- gUCG--UGGGGCCCCa-CU---GCa---CCgUGGG- -5'
29115 3' -62.2 NC_006146.1 + 71005 0.66 0.694061
Target:  5'- -uGCGCCCgGGGGgca-GaGGCGCCg -3'
miRNA:   3'- guCGUGGGgCCCCacugCaCCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 58223 0.66 0.684488
Target:  5'- gUAGCGCacaCCGGGGgcgugGACaagGGCuauaaaagggGCCCg -3'
miRNA:   3'- -GUCGUGg--GGCCCCa----CUGca-CCG----------UGGG- -5'
29115 3' -62.2 NC_006146.1 + 41128 0.66 0.684488
Target:  5'- uUAGggUCCCGGGGgaggGGCGUGcGCugACUCu -3'
miRNA:   3'- -GUCguGGGGCCCCa---CUGCAC-CG--UGGG- -5'
29115 3' -62.2 NC_006146.1 + 113640 0.66 0.681608
Target:  5'- aCGGUGCUCCGGGG-GA--UGGCcuugcugaccacggGCCCg -3'
miRNA:   3'- -GUCGUGGGGCCCCaCUgcACCG--------------UGGG- -5'
29115 3' -62.2 NC_006146.1 + 170443 0.66 0.674875
Target:  5'- cCGGCGCgugCCGGGGgacccgggGGCGUGucccGCgACCCg -3'
miRNA:   3'- -GUCGUGg--GGCCCCa-------CUGCAC----CG-UGGG- -5'
29115 3' -62.2 NC_006146.1 + 157814 0.66 0.674875
Target:  5'- uGGCgACCCUGGGGUcugucuggggGACugagGGCGgCCg -3'
miRNA:   3'- gUCG-UGGGGCCCCA----------CUGca--CCGUgGG- -5'
29115 3' -62.2 NC_006146.1 + 142425 0.66 0.674875
Target:  5'- uGGCgACCCUGGGGUcugucuggggGACugagGGCGgCCg -3'
miRNA:   3'- gUCG-UGGGGCCCCA----------CUGca--CCGUgGG- -5'
29115 3' -62.2 NC_006146.1 + 145503 0.66 0.674875
Target:  5'- uGGCgACCCUGGGGUcugucuggggGACugagGGCGgCCg -3'
miRNA:   3'- gUCG-UGGGGCCCCA----------CUGca--CCGUgGG- -5'
29115 3' -62.2 NC_006146.1 + 148581 0.66 0.674875
Target:  5'- uGGCgACCCUGGGGUcugucuggggGACugagGGCGgCCg -3'
miRNA:   3'- gUCG-UGGGGCCCCA----------CUGca--CCGUgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.