miRNA display CGI


Results 21 - 40 of 177 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29115 3' -62.2 NC_006146.1 + 71005 0.66 0.694061
Target:  5'- -uGCGCCCgGGGGgca-GaGGCGCCg -3'
miRNA:   3'- guCGUGGGgCCCCacugCaCCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 58223 0.66 0.684488
Target:  5'- gUAGCGCacaCCGGGGgcgugGACaagGGCuauaaaagggGCCCg -3'
miRNA:   3'- -GUCGUGg--GGCCCCa----CUGca-CCG----------UGGG- -5'
29115 3' -62.2 NC_006146.1 + 157814 0.66 0.674875
Target:  5'- uGGCgACCCUGGGGUcugucuggggGACugagGGCGgCCg -3'
miRNA:   3'- gUCG-UGGGGCCCCA----------CUGca--CCGUgGG- -5'
29115 3' -62.2 NC_006146.1 + 148581 0.66 0.674875
Target:  5'- uGGCgACCCUGGGGUcugucuggggGACugagGGCGgCCg -3'
miRNA:   3'- gUCG-UGGGGCCCCA----------CUGca--CCGUgGG- -5'
29115 3' -62.2 NC_006146.1 + 113640 0.66 0.681608
Target:  5'- aCGGUGCUCCGGGG-GA--UGGCcuugcugaccacggGCCCg -3'
miRNA:   3'- -GUCGUGGGGCCCCaCUgcACCG--------------UGGG- -5'
29115 3' -62.2 NC_006146.1 + 154736 0.66 0.674875
Target:  5'- uGGCgACCCUGGGGUcugucuggggGACugagGGCGgCCg -3'
miRNA:   3'- gUCG-UGGGGCCCCA----------CUGca--CCGUgGG- -5'
29115 3' -62.2 NC_006146.1 + 41128 0.66 0.684488
Target:  5'- uUAGggUCCCGGGGgaggGGCGUGcGCugACUCu -3'
miRNA:   3'- -GUCguGGGGCCCCa---CUGCAC-CG--UGGG- -5'
29115 3' -62.2 NC_006146.1 + 62995 0.67 0.626487
Target:  5'- uGGCccuggGCUCCGGGaGUcuGGCG-GGUGCCCg -3'
miRNA:   3'- gUCG-----UGGGGCCC-CA--CUGCaCCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 151659 0.67 0.642971
Target:  5'- uGGCgACCCUGGGGUcugucugggggacuGAgGgcGGCGCCUu -3'
miRNA:   3'- gUCG-UGGGGCCCCA--------------CUgCa-CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 50205 0.67 0.645879
Target:  5'- gGGUagGCCCgGgGGGUGA-GUGGUcaACCCc -3'
miRNA:   3'- gUCG--UGGGgC-CCCACUgCACCG--UGGG- -5'
29115 3' -62.2 NC_006146.1 + 129951 0.67 0.645879
Target:  5'- aCGGCACggaCCUGGGGUGGguccUGaGGCACUUu -3'
miRNA:   3'- -GUCGUG---GGGCCCCACU----GCaCCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 155590 0.67 0.616794
Target:  5'- gGGCACaCCGGGGcUGGCcuccGGC-CCCu -3'
miRNA:   3'- gUCGUGgGGCCCC-ACUGca--CCGuGGG- -5'
29115 3' -62.2 NC_006146.1 + 33385 0.67 0.616794
Target:  5'- -cGCugCCCcgcuccggguggGGGGUGGCccgccugGGCACCg -3'
miRNA:   3'- guCGugGGG------------CCCCACUGca-----CCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 32353 0.67 0.636184
Target:  5'- -cGCACCUCGaGGUaGGauaGgggGGCACCCg -3'
miRNA:   3'- guCGUGGGGCcCCA-CUg--Ca--CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 13628 0.67 0.645879
Target:  5'- --cCACCCUGGGGcUGACGaucaaGCGCCg -3'
miRNA:   3'- gucGUGGGGCCCC-ACUGCac---CGUGGg -5'
29115 3' -62.2 NC_006146.1 + 102896 0.67 0.636184
Target:  5'- gGGgACgCCaGGGGccgugUGGCGUGGCugcGCCCc -3'
miRNA:   3'- gUCgUGgGG-CCCC-----ACUGCACCG---UGGG- -5'
29115 3' -62.2 NC_006146.1 + 115331 0.67 0.595514
Target:  5'- aCGGCACCCCGGacucggucaucgaGGccuuccuggccGGCGUGGCggcggagcuggagGCCCu -3'
miRNA:   3'- -GUCGUGGGGCC-------------CCa----------CUGCACCG-------------UGGG- -5'
29115 3' -62.2 NC_006146.1 + 118052 0.67 0.597445
Target:  5'- gAGC-CCCCGGGcGggGGCGgcggcGGCucgGCCCu -3'
miRNA:   3'- gUCGuGGGGCCC-Ca-CUGCa----CCG---UGGG- -5'
29115 3' -62.2 NC_006146.1 + 140526 0.67 0.615825
Target:  5'- aCAGCaaaccuaGCCCUGGGaGgGAC--GGCACCCc -3'
miRNA:   3'- -GUCG-------UGGGGCCC-CaCUGcaCCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 10102 0.67 0.616794
Target:  5'- gAGgACCCCGGucgaGGCGUGGgucuCACCCu -3'
miRNA:   3'- gUCgUGGGGCCcca-CUGCACC----GUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.