miRNA display CGI


Results 61 - 80 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29115 3' -62.2 NC_006146.1 + 114243 0.69 0.493831
Target:  5'- cCGGCACCUCaGGGagGGCcagcucguaGUGGUGCCCc -3'
miRNA:   3'- -GUCGUGGGGcCCCa-CUG---------CACCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 169172 0.69 0.475819
Target:  5'- cCGGCGCCUgcaGGGGgggccGGCGgGGCGuCCCg -3'
miRNA:   3'- -GUCGUGGGg--CCCCa----CUGCaCCGU-GGG- -5'
29115 3' -62.2 NC_006146.1 + 137986 0.69 0.484785
Target:  5'- gGGgGCCCggCGGGGUGGgGgGuGCGCCCc -3'
miRNA:   3'- gUCgUGGG--GCCCCACUgCaC-CGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 167308 0.69 0.475819
Target:  5'- cCGGCGCCUgcaGGGGgggccGGCGgGGCGuCCCg -3'
miRNA:   3'- -GUCGUGGGg--CCCCa----CUGCaCCGU-GGG- -5'
29115 3' -62.2 NC_006146.1 + 115855 0.69 0.493831
Target:  5'- uGGcCACCCCGGGGUGAaucuUGaGCuugGCCUg -3'
miRNA:   3'- gUC-GUGGGGCCCCACUgc--AC-CG---UGGG- -5'
29115 3' -62.2 NC_006146.1 + 170104 0.69 0.493831
Target:  5'- cCGGCGCCgCaGGGGgggccGGCGgGGCGuCCCg -3'
miRNA:   3'- -GUCGUGGgG-CCCCa----CUGCaCCGU-GGG- -5'
29115 3' -62.2 NC_006146.1 + 51824 0.69 0.502954
Target:  5'- -cGUuCCCCGGGGcGGCGUGGagggggGCUCg -3'
miRNA:   3'- guCGuGGGGCCCCaCUGCACCg-----UGGG- -5'
29115 3' -62.2 NC_006146.1 + 139038 0.69 0.502954
Target:  5'- -cGCAUCCCaGGGGcgGaaGCGUGG-ACCCa -3'
miRNA:   3'- guCGUGGGG-CCCCa-C--UGCACCgUGGG- -5'
29115 3' -62.2 NC_006146.1 + 167611 0.69 0.512149
Target:  5'- gGGgGCCUCGGGGgcgGAgGgggGGguCCCg -3'
miRNA:   3'- gUCgUGGGGCCCCa--CUgCa--CCguGGG- -5'
29115 3' -62.2 NC_006146.1 + 168543 0.69 0.512149
Target:  5'- gGGgGCCUCGGGGgcgGAgGgggGGguCCCg -3'
miRNA:   3'- gUCgUGGGGCCCCa--CUgCa--CCguGGG- -5'
29115 3' -62.2 NC_006146.1 + 170406 0.69 0.512149
Target:  5'- gGGgGCCUCGGGGgcgGAgGgggGGguCCCg -3'
miRNA:   3'- gUCgUGGGGCCCCa--CUgCa--CCguGGG- -5'
29115 3' -62.2 NC_006146.1 + 169475 0.69 0.512149
Target:  5'- gGGgGCCUCGGGGgcgGAgGgggGGguCCCg -3'
miRNA:   3'- gUCgUGGGGCCCCa--CUgCa--CCguGGG- -5'
29115 3' -62.2 NC_006146.1 + 3726 0.69 0.512149
Target:  5'- aGGguCUCUGGGGgccGCGUGGCccuucaGCCCg -3'
miRNA:   3'- gUCguGGGGCCCCac-UGCACCG------UGGG- -5'
29115 3' -62.2 NC_006146.1 + 168240 0.69 0.475819
Target:  5'- cCGGCGCCUgcaGGGGgggccGGCGgGGCGuCCCg -3'
miRNA:   3'- -GUCGUGGGg--CCCCa----CUGCaCCGU-GGG- -5'
29115 3' -62.2 NC_006146.1 + 35686 0.68 0.578187
Target:  5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 35593 0.68 0.578187
Target:  5'- cCGGcCACCCCccgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG----------CCCCa----CUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 33921 0.68 0.568607
Target:  5'- cCGGcCACCCCcgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG---------CCCCa----CUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 153889 0.68 0.543901
Target:  5'- cCGGgGCCUCGGGGaggGagagaggagggggagGCG-GGCGCCCu -3'
miRNA:   3'- -GUCgUGGGGCCCCa--C---------------UGCaCCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 156967 0.68 0.543901
Target:  5'- cCGGgGCCUCGGGGaggGagagaggagggggagGCG-GGCGCCCu -3'
miRNA:   3'- -GUCgUGGGGCCCCa--C---------------UGCaCCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 100750 0.68 0.56002
Target:  5'- cCAGCGCCCCGGccaggagccaGGcGAaggcggcaaagaucaGUGGCACgCCu -3'
miRNA:   3'- -GUCGUGGGGCC----------CCaCUg--------------CACCGUG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.