miRNA display CGI


Results 21 - 40 of 177 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29115 3' -62.2 NC_006146.1 + 31750 0.72 0.345346
Target:  5'- aGGCGCCCCcccGGGG-GACG-GGaGCCCc -3'
miRNA:   3'- gUCGUGGGG---CCCCaCUGCaCCgUGGG- -5'
29115 3' -62.2 NC_006146.1 + 137708 0.72 0.345346
Target:  5'- cCGGCcuccCCCCGGGGUGccCG-GGCcuACCCg -3'
miRNA:   3'- -GUCGu---GGGGCCCCACu-GCaCCG--UGGG- -5'
29115 3' -62.2 NC_006146.1 + 157833 0.72 0.345346
Target:  5'- -cGCugGCCCCGGaGGgGACG-GGCACCg -3'
miRNA:   3'- guCG--UGGGGCC-CCaCUGCaCCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 44427 0.72 0.367776
Target:  5'- gGGC-UCCCGGGGUc---UGGCACCCg -3'
miRNA:   3'- gUCGuGGGGCCCCAcugcACCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 154188 0.72 0.367776
Target:  5'- aCAGUauccACCCCGGGGcGuCGUGG-ACCUg -3'
miRNA:   3'- -GUCG----UGGGGCCCCaCuGCACCgUGGG- -5'
29115 3' -62.2 NC_006146.1 + 57760 0.72 0.370841
Target:  5'- aCGGauaGCCUCGGGG-GGCGUGGgagauuugaggcagcCGCCCu -3'
miRNA:   3'- -GUCg--UGGGGCCCCaCUGCACC---------------GUGGG- -5'
29115 3' -62.2 NC_006146.1 + 90046 0.71 0.375472
Target:  5'- uGGCACCgCGGGGUGcguuaugcACGUGG-GCCa -3'
miRNA:   3'- gUCGUGGgGCCCCAC--------UGCACCgUGGg -5'
29115 3' -62.2 NC_006146.1 + 157029 0.71 0.383276
Target:  5'- gGGCgGCUgCGGGG-GACGcUGGCACaCCg -3'
miRNA:   3'- gUCG-UGGgGCCCCaCUGC-ACCGUG-GG- -5'
29115 3' -62.2 NC_006146.1 + 150873 0.71 0.383276
Target:  5'- gGGCgGCUgCGGGG-GACGcUGGCACaCCg -3'
miRNA:   3'- gUCG-UGGgGCCCCaCUGC-ACCGUG-GG- -5'
29115 3' -62.2 NC_006146.1 + 141640 0.71 0.383276
Target:  5'- gGGCgGCUgCGGGG-GACGcUGGCACaCCg -3'
miRNA:   3'- gUCG-UGGgGCCCCaCUGC-ACCGUG-GG- -5'
29115 3' -62.2 NC_006146.1 + 153951 0.71 0.383276
Target:  5'- gGGCgGCUgCGGGG-GACGcUGGCACaCCg -3'
miRNA:   3'- gUCG-UGGgGCCCCaCUGC-ACCGUG-GG- -5'
29115 3' -62.2 NC_006146.1 + 144717 0.71 0.383276
Target:  5'- gGGCgGCUgCGGGG-GACGcUGGCACaCCg -3'
miRNA:   3'- gUCG-UGGgGCCCCaCUGC-ACCGUG-GG- -5'
29115 3' -62.2 NC_006146.1 + 147795 0.71 0.383276
Target:  5'- gGGCgGCUgCGGGG-GACGcUGGCACaCCg -3'
miRNA:   3'- gUCG-UGGgGCCCCaCUGC-ACCGUG-GG- -5'
29115 3' -62.2 NC_006146.1 + 50226 0.71 0.383276
Target:  5'- -uGCACCCgCGagauGGUGGCgGUGGCugCCu -3'
miRNA:   3'- guCGUGGG-GCc---CCACUG-CACCGugGG- -5'
29115 3' -62.2 NC_006146.1 + 33693 0.71 0.383276
Target:  5'- cCGGCuuccuCCCCGGGGUGuGCccGGCcuACCCc -3'
miRNA:   3'- -GUCGu----GGGGCCCCAC-UGcaCCG--UGGG- -5'
29115 3' -62.2 NC_006146.1 + 169755 0.71 0.415548
Target:  5'- gGGCGgCCCGGGGacccucGCGggGGCACCg -3'
miRNA:   3'- gUCGUgGGGCCCCac----UGCa-CCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 167891 0.71 0.415548
Target:  5'- gGGCGgCCCGGGGacccucGCGggGGCACCg -3'
miRNA:   3'- gUCGUgGGGCCCCac----UGCa-CCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 168823 0.71 0.415548
Target:  5'- gGGCGgCCCGGGGacccucGCGggGGCACCg -3'
miRNA:   3'- gUCGUgGGGCCCCac----UGCa-CCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 128508 0.7 0.423873
Target:  5'- aCGGCG--UCGGGGUGGCccuggGGCGCCCc -3'
miRNA:   3'- -GUCGUggGGCCCCACUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 115528 0.7 0.428915
Target:  5'- uCGGUGCCCCGGgcgucccgcgcgcGGUGGCGggGGCuggaggcgaccgcgGCCCu -3'
miRNA:   3'- -GUCGUGGGGCC-------------CCACUGCa-CCG--------------UGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.