miRNA display CGI


Results 41 - 60 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29115 3' -62.2 NC_006146.1 + 48055 0.7 0.432297
Target:  5'- cCAGCGCCCCGGGca-GCGUGcGguCCa -3'
miRNA:   3'- -GUCGUGGGGCCCcacUGCAC-CguGGg -5'
29115 3' -62.2 NC_006146.1 + 168299 0.7 0.432297
Target:  5'- gCGGCGCCggCCGGGGgcUGAgGgGGCuCCCg -3'
miRNA:   3'- -GUCGUGG--GGCCCC--ACUgCaCCGuGGG- -5'
29115 3' -62.2 NC_006146.1 + 170162 0.7 0.432297
Target:  5'- gCGGCGCCggCCGGGGgcUGAgGgGGCuCCCg -3'
miRNA:   3'- -GUCGUGG--GGCCCC--ACUgCaCCGuGGG- -5'
29115 3' -62.2 NC_006146.1 + 169231 0.7 0.432297
Target:  5'- gCGGCGCCggCCGGGGgcUGAgGgGGCuCCCg -3'
miRNA:   3'- -GUCGUGG--GGCCCC--ACUgCaCCGuGGG- -5'
29115 3' -62.2 NC_006146.1 + 167367 0.7 0.432297
Target:  5'- gCGGCGCCggCCGGGGgcUGAgGgGGCuCCCg -3'
miRNA:   3'- -GUCGUGG--GGCCCC--ACUgCaCCGuGGG- -5'
29115 3' -62.2 NC_006146.1 + 33880 0.7 0.440817
Target:  5'- cCGGCcuccuCCCCGGGGUGuGCccGGCcuACCCc -3'
miRNA:   3'- -GUCGu----GGGGCCCCAC-UGcaCCG--UGGG- -5'
29115 3' -62.2 NC_006146.1 + 154662 0.7 0.440817
Target:  5'- cCGGCugCaCCGuGGUGGCGgggGGCGCUg -3'
miRNA:   3'- -GUCGugG-GGCcCCACUGCa--CCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 8510 0.7 0.449432
Target:  5'- uGGC-CCaCCGGGGUcccgGGCGcgGGCGCgCCa -3'
miRNA:   3'- gUCGuGG-GGCCCCA----CUGCa-CCGUG-GG- -5'
29115 3' -62.2 NC_006146.1 + 100708 0.7 0.449432
Target:  5'- cCGGCGCUgCGGGGgugGGUGUGGgACCg -3'
miRNA:   3'- -GUCGUGGgGCCCCa--CUGCACCgUGGg -5'
29115 3' -62.2 NC_006146.1 + 51213 0.7 0.456391
Target:  5'- gGGCAUCcacgaggCCGGGGUGGCG-GGUgagguuggugaugGCCCu -3'
miRNA:   3'- gUCGUGG-------GGCCCCACUGCaCCG-------------UGGG- -5'
29115 3' -62.2 NC_006146.1 + 15318 0.7 0.45814
Target:  5'- aGGCcaGCCCCGGuGUGccccugGCG-GGCGCCCc -3'
miRNA:   3'- gUCG--UGGGGCCcCAC------UGCaCCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 76099 0.7 0.45814
Target:  5'- gGGCAacCCCCGGGccucggccuacGUgGACGUGGCccgcaacuggGCCCu -3'
miRNA:   3'- gUCGU--GGGGCCC-----------CA-CUGCACCG----------UGGG- -5'
29115 3' -62.2 NC_006146.1 + 44952 0.7 0.45814
Target:  5'- gGGCgcggggagGCCCCGGGG-GACucgaccgcgGUGGCcggACCCu -3'
miRNA:   3'- gUCG--------UGGGGCCCCaCUG---------CACCG---UGGG- -5'
29115 3' -62.2 NC_006146.1 + 160872 0.7 0.464288
Target:  5'- cCAGCucaccuGCCCCGGGuuuuauguuaaaaugGGCGUGGCAaaaCCg -3'
miRNA:   3'- -GUCG------UGGGGCCCca-------------CUGCACCGUg--GG- -5'
29115 3' -62.2 NC_006146.1 + 157606 0.7 0.466052
Target:  5'- cCAGCACgUgGGGGUagucgcgGGCG-GGCACCg -3'
miRNA:   3'- -GUCGUGgGgCCCCA-------CUGCaCCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 102760 0.69 0.475819
Target:  5'- aGGCAgCCCCuuuccuGcGUGGCGUGGCGCCg -3'
miRNA:   3'- gUCGU-GGGGcc----C-CACUGCACCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 169172 0.69 0.475819
Target:  5'- cCGGCGCCUgcaGGGGgggccGGCGgGGCGuCCCg -3'
miRNA:   3'- -GUCGUGGGg--CCCCa----CUGCaCCGU-GGG- -5'
29115 3' -62.2 NC_006146.1 + 167308 0.69 0.475819
Target:  5'- cCGGCGCCUgcaGGGGgggccGGCGgGGCGuCCCg -3'
miRNA:   3'- -GUCGUGGGg--CCCCa----CUGCaCCGU-GGG- -5'
29115 3' -62.2 NC_006146.1 + 168240 0.69 0.475819
Target:  5'- cCGGCGCCUgcaGGGGgggccGGCGgGGCGuCCCg -3'
miRNA:   3'- -GUCGUGGGg--CCCCa----CUGCaCCGU-GGG- -5'
29115 3' -62.2 NC_006146.1 + 137986 0.69 0.484785
Target:  5'- gGGgGCCCggCGGGGUGGgGgGuGCGCCCc -3'
miRNA:   3'- gUCgUGGG--GCCCCACUgCaC-CGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.