Results 61 - 80 of 177 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29115 | 3' | -62.2 | NC_006146.1 | + | 114243 | 0.69 | 0.493831 |
Target: 5'- cCGGCACCUCaGGGagGGCcagcucguaGUGGUGCCCc -3' miRNA: 3'- -GUCGUGGGGcCCCa-CUG---------CACCGUGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 115855 | 0.69 | 0.493831 |
Target: 5'- uGGcCACCCCGGGGUGAaucuUGaGCuugGCCUg -3' miRNA: 3'- gUC-GUGGGGCCCCACUgc--AC-CG---UGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 170104 | 0.69 | 0.493831 |
Target: 5'- cCGGCGCCgCaGGGGgggccGGCGgGGCGuCCCg -3' miRNA: 3'- -GUCGUGGgG-CCCCa----CUGCaCCGU-GGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 51824 | 0.69 | 0.502954 |
Target: 5'- -cGUuCCCCGGGGcGGCGUGGagggggGCUCg -3' miRNA: 3'- guCGuGGGGCCCCaCUGCACCg-----UGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 139038 | 0.69 | 0.502954 |
Target: 5'- -cGCAUCCCaGGGGcgGaaGCGUGG-ACCCa -3' miRNA: 3'- guCGUGGGG-CCCCa-C--UGCACCgUGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 168543 | 0.69 | 0.512149 |
Target: 5'- gGGgGCCUCGGGGgcgGAgGgggGGguCCCg -3' miRNA: 3'- gUCgUGGGGCCCCa--CUgCa--CCguGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 117421 | 0.69 | 0.512149 |
Target: 5'- -cGCACCCCcGGcccugaccGACGaGGCACCCg -3' miRNA: 3'- guCGUGGGGcCCca------CUGCaCCGUGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 167611 | 0.69 | 0.512149 |
Target: 5'- gGGgGCCUCGGGGgcgGAgGgggGGguCCCg -3' miRNA: 3'- gUCgUGGGGCCCCa--CUgCa--CCguGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 3726 | 0.69 | 0.512149 |
Target: 5'- aGGguCUCUGGGGgccGCGUGGCccuucaGCCCg -3' miRNA: 3'- gUCguGGGGCCCCac-UGCACCG------UGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 170406 | 0.69 | 0.512149 |
Target: 5'- gGGgGCCUCGGGGgcgGAgGgggGGguCCCg -3' miRNA: 3'- gUCgUGGGGCCCCa--CUgCa--CCguGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 169475 | 0.69 | 0.512149 |
Target: 5'- gGGgGCCUCGGGGgcgGAgGgggGGguCCCg -3' miRNA: 3'- gUCgUGGGGCCCCa--CUgCa--CCguGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 55055 | 0.69 | 0.519555 |
Target: 5'- --uCACCCCGGGGUGGCcaugacgGUGGUcaggacggacgagAUCCu -3' miRNA: 3'- gucGUGGGGCCCCACUG-------CACCG-------------UGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 159684 | 0.69 | 0.521413 |
Target: 5'- uUAGCAUCCCgugacauucacaGGGGcaggguuucggUGGCuucaugGUGGCGCCCg -3' miRNA: 3'- -GUCGUGGGG------------CCCC-----------ACUG------CACCGUGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 18856 | 0.69 | 0.521413 |
Target: 5'- gGGCGCUgCCGGGGUGguggacguGCGggGGCcucaGCCCc -3' miRNA: 3'- gUCGUGG-GGCCCCAC--------UGCa-CCG----UGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 115057 | 0.68 | 0.529806 |
Target: 5'- -uGCACCUCGGuguugcuGGUGGcCG-GGUGCCCa -3' miRNA: 3'- guCGUGGGGCC-------CCACU-GCaCCGUGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 29590 | 0.68 | 0.530742 |
Target: 5'- aCAGgACCCCGGGGgcucaGCcaGGCugaACCCg -3' miRNA: 3'- -GUCgUGGGGCCCCac---UGcaCCG---UGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 162615 | 0.68 | 0.530742 |
Target: 5'- gAGCgACCCCGGGa-GugG-GGCuCCCa -3' miRNA: 3'- gUCG-UGGGGCCCcaCugCaCCGuGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 56380 | 0.68 | 0.530742 |
Target: 5'- gAGCACCgCCGccGGGUaaGCGUGGcCGCUCg -3' miRNA: 3'- gUCGUGG-GGC--CCCAc-UGCACC-GUGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 53341 | 0.68 | 0.530742 |
Target: 5'- cCGGCGgCCgCGGGGcGGCGUgaggucuuGGCugGCCCg -3' miRNA: 3'- -GUCGUgGG-GCCCCaCUGCA--------CCG--UGGG- -5' |
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29115 | 3' | -62.2 | NC_006146.1 | + | 60659 | 0.68 | 0.53449 |
Target: 5'- -uGCACCCUcaucgagacccacgaGGGG-GugGUGuGUGCCCu -3' miRNA: 3'- guCGUGGGG---------------CCCCaCugCAC-CGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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