miRNA display CGI


Results 21 - 40 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29115 3' -62.2 NC_006146.1 + 148581 0.66 0.674875
Target:  5'- uGGCgACCCUGGGGUcugucuggggGACugagGGCGgCCg -3'
miRNA:   3'- gUCG-UGGGGCCCCA----------CUGca--CCGUgGG- -5'
29115 3' -62.2 NC_006146.1 + 154736 0.66 0.674875
Target:  5'- uGGCgACCCUGGGGUcugucuggggGACugagGGCGgCCg -3'
miRNA:   3'- gUCG-UGGGGCCCCA----------CUGca--CCGUgGG- -5'
29115 3' -62.2 NC_006146.1 + 145503 0.66 0.674875
Target:  5'- uGGCgACCCUGGGGUcugucuggggGACugagGGCGgCCg -3'
miRNA:   3'- gUCG-UGGGGCCCCA----------CUGca--CCGUgGG- -5'
29115 3' -62.2 NC_006146.1 + 74845 0.66 0.666197
Target:  5'- -uGCAgCCCuGGGUGAUGggcuucuugacggccGGCACCa -3'
miRNA:   3'- guCGUgGGGcCCCACUGCa--------------CCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 123715 0.66 0.665231
Target:  5'- uGGCG-CUCGGGGcGGCGgcgGGCucuCCCc -3'
miRNA:   3'- gUCGUgGGGCCCCaCUGCa--CCGu--GGG- -5'
29115 3' -62.2 NC_006146.1 + 25876 0.66 0.665231
Target:  5'- -cGCugCCCGGGaacauUGugGUGGagaGCUCc -3'
miRNA:   3'- guCGugGGGCCCc----ACugCACCg--UGGG- -5'
29115 3' -62.2 NC_006146.1 + 130222 0.66 0.665231
Target:  5'- aAGCACCUCaGGGUG--GUGGCcagGCCg -3'
miRNA:   3'- gUCGUGGGGcCCCACugCACCG---UGGg -5'
29115 3' -62.2 NC_006146.1 + 68732 0.67 0.645879
Target:  5'- gAGCugUCgCGGGGUG--GUGGagGCCCa -3'
miRNA:   3'- gUCGugGG-GCCCCACugCACCg-UGGG- -5'
29115 3' -62.2 NC_006146.1 + 50205 0.67 0.645879
Target:  5'- gGGUagGCCCgGgGGGUGA-GUGGUcaACCCc -3'
miRNA:   3'- gUCG--UGGGgC-CCCACUgCACCG--UGGG- -5'
29115 3' -62.2 NC_006146.1 + 13628 0.67 0.645879
Target:  5'- --cCACCCUGGGGcUGACGaucaaGCGCCg -3'
miRNA:   3'- gucGUGGGGCCCC-ACUGCac---CGUGGg -5'
29115 3' -62.2 NC_006146.1 + 30129 0.67 0.645879
Target:  5'- gAGCGCCCCcaugcaggGGGGUgGGCaUGGCcacgcAUCCg -3'
miRNA:   3'- gUCGUGGGG--------CCCCA-CUGcACCG-----UGGG- -5'
29115 3' -62.2 NC_006146.1 + 129951 0.67 0.645879
Target:  5'- aCGGCACggaCCUGGGGUGGguccUGaGGCACUUu -3'
miRNA:   3'- -GUCGUG---GGGCCCCACU----GCaCCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 151659 0.67 0.642971
Target:  5'- uGGCgACCCUGGGGUcugucugggggacuGAgGgcGGCGCCUu -3'
miRNA:   3'- gUCG-UGGGGCCCCA--------------CUgCa-CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 32353 0.67 0.636184
Target:  5'- -cGCACCUCGaGGUaGGauaGgggGGCACCCg -3'
miRNA:   3'- guCGUGGGGCcCCA-CUg--Ca--CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 102896 0.67 0.636184
Target:  5'- gGGgACgCCaGGGGccgugUGGCGUGGCugcGCCCc -3'
miRNA:   3'- gUCgUGgGG-CCCC-----ACUGCACCG---UGGG- -5'
29115 3' -62.2 NC_006146.1 + 147157 0.67 0.636184
Target:  5'- gCGGCAguugaCCCGGcGGcGGCGcagaccGGCGCCCc -3'
miRNA:   3'- -GUCGUg----GGGCC-CCaCUGCa-----CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 167648 0.67 0.636184
Target:  5'- cCGGCGCgugCCGGGGgcccgggGGCGUGucccGCgACCCg -3'
miRNA:   3'- -GUCGUGg--GGCCCCa------CUGCAC----CG-UGGG- -5'
29115 3' -62.2 NC_006146.1 + 62995 0.67 0.626487
Target:  5'- uGGCccuggGCUCCGGGaGUcuGGCG-GGUGCCCg -3'
miRNA:   3'- gUCG-----UGGGGCCC-CA--CUGCaCCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 33139 0.67 0.616794
Target:  5'- -cGCugCCCcgcuccggguggGGGGUGGCccggcugGGCACCg -3'
miRNA:   3'- guCGugGGG------------CCCCACUGca-----CCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 33263 0.67 0.616794
Target:  5'- -cGCugCCCcgcuccggguggGGGGUGGCccggcugGGCACCg -3'
miRNA:   3'- guCGugGGG------------CCCCACUGca-----CCGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.