miRNA display CGI


Results 81 - 100 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29115 3' -62.2 NC_006146.1 + 51740 0.68 0.568607
Target:  5'- gCGGCGCCCCGaGGUGggcuucuuguGCG-GGCugUCc -3'
miRNA:   3'- -GUCGUGGGGCcCCAC----------UGCaCCGugGG- -5'
29115 3' -62.2 NC_006146.1 + 53597 0.68 0.568607
Target:  5'- aGGgAUgCCGGGGaaagGGCGcGGCACCg -3'
miRNA:   3'- gUCgUGgGGCCCCa---CUGCaCCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 33921 0.68 0.568607
Target:  5'- cCGGcCACCCCcgccggagcGGGGcagcgGACccaggGGCACCCg -3'
miRNA:   3'- -GUC-GUGGGG---------CCCCa----CUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 100750 0.68 0.56002
Target:  5'- cCAGCGCCCCGGccaggagccaGGcGAaggcggcaaagaucaGUGGCACgCCu -3'
miRNA:   3'- -GUCGUGGGGCC----------CCaCUg--------------CACCGUG-GG- -5'
29115 3' -62.2 NC_006146.1 + 80090 0.68 0.559068
Target:  5'- aCAGCGCCU--GGGUGGCGacacugGGUGCUCa -3'
miRNA:   3'- -GUCGUGGGgcCCCACUGCa-----CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 48626 0.68 0.559068
Target:  5'- gGGUGCCgUGGGGgcgggcuccgGGCG-GGUGCCCa -3'
miRNA:   3'- gUCGUGGgGCCCCa---------CUGCaCCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 47012 0.68 0.559068
Target:  5'- gCAGCGgCCCGGucgGACucgcgGGCGCCCu -3'
miRNA:   3'- -GUCGUgGGGCCccaCUGca---CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 58965 0.68 0.549574
Target:  5'- gCAGC-CCUCGaGGGaGACgGUGGcCACCUg -3'
miRNA:   3'- -GUCGuGGGGC-CCCaCUG-CACC-GUGGG- -5'
29115 3' -62.2 NC_006146.1 + 49487 0.68 0.549574
Target:  5'- gCGGUgucgGCCa-GGGGcGGCGUGGCAUCUg -3'
miRNA:   3'- -GUCG----UGGggCCCCaCUGCACCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 156967 0.68 0.543901
Target:  5'- cCGGgGCCUCGGGGaggGagagaggagggggagGCG-GGCGCCCu -3'
miRNA:   3'- -GUCgUGGGGCCCCa--C---------------UGCaCCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 153889 0.68 0.543901
Target:  5'- cCGGgGCCUCGGGGaggGagagaggagggggagGCG-GGCGCCCu -3'
miRNA:   3'- -GUCgUGGGGCCCCa--C---------------UGCaCCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 150811 0.68 0.543901
Target:  5'- cCGGgGCCUCGGGGaggGagagaggagggggagGCG-GGCGCCCu -3'
miRNA:   3'- -GUCgUGGGGCCCCa--C---------------UGCaCCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 147733 0.68 0.543901
Target:  5'- cCGGgGCCUCGGGGaggGagagaggagggggagGCG-GGCGCCCu -3'
miRNA:   3'- -GUCgUGGGGCCCCa--C---------------UGCaCCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 144656 0.68 0.543901
Target:  5'- cCGGgGCCUCGGGGaggGagagaggagggggagGCG-GGCGCCCu -3'
miRNA:   3'- -GUCgUGGGGCCCCa--C---------------UGCaCCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 141578 0.68 0.543901
Target:  5'- cCGGgGCCUCGGGGaggGagagaggagggggagGCG-GGCGCCCu -3'
miRNA:   3'- -GUCgUGGGGCCCCa--C---------------UGCaCCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 109339 0.68 0.54013
Target:  5'- uCAGCgugGCCCuCGGGGUGgggaauagacaGCGagGGCGuCCCc -3'
miRNA:   3'- -GUCG---UGGG-GCCCCAC-----------UGCa-CCGU-GGG- -5'
29115 3' -62.2 NC_006146.1 + 128190 0.68 0.54013
Target:  5'- aGGCGgCCCaGGGG-GGCGccgcGGCGCCg -3'
miRNA:   3'- gUCGUgGGG-CCCCaCUGCa---CCGUGGg -5'
29115 3' -62.2 NC_006146.1 + 60659 0.68 0.53449
Target:  5'- -uGCACCCUcaucgagacccacgaGGGG-GugGUGuGUGCCCu -3'
miRNA:   3'- guCGUGGGG---------------CCCCaCugCAC-CGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 53341 0.68 0.530742
Target:  5'- cCGGCGgCCgCGGGGcGGCGUgaggucuuGGCugGCCCg -3'
miRNA:   3'- -GUCGUgGG-GCCCCaCUGCA--------CCG--UGGG- -5'
29115 3' -62.2 NC_006146.1 + 29590 0.68 0.530742
Target:  5'- aCAGgACCCCGGGGgcucaGCcaGGCugaACCCg -3'
miRNA:   3'- -GUCgUGGGGCCCCac---UGcaCCG---UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.