miRNA display CGI


Results 1 - 20 of 177 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29115 3' -62.2 NC_006146.1 + 1163 0.68 0.576268
Target:  5'- gGGcCGCCCCGGGGcucccccgcgccGAUcUGaGCGCCCa -3'
miRNA:   3'- gUC-GUGGGGCCCCa-----------CUGcAC-CGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 2095 0.68 0.576268
Target:  5'- gGGcCGCCCCGGGGcucccccgcgccGAUcUGaGCGCCCa -3'
miRNA:   3'- gUC-GUGGGGCCCCa-----------CUGcAC-CGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 3027 0.68 0.576268
Target:  5'- gGGcCGCCCCGGGGcucccccgcgccGAUcUGaGCGCCCa -3'
miRNA:   3'- gUC-GUGGGGCCCCa-----------CUGcAC-CGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 3726 0.69 0.512149
Target:  5'- aGGguCUCUGGGGgccGCGUGGCccuucaGCCCg -3'
miRNA:   3'- gUCguGGGGCCCCac-UGCACCG------UGGG- -5'
29115 3' -62.2 NC_006146.1 + 8510 0.7 0.449432
Target:  5'- uGGC-CCaCCGGGGUcccgGGCGcgGGCGCgCCa -3'
miRNA:   3'- gUCGuGG-GGCCCCA----CUGCa-CCGUG-GG- -5'
29115 3' -62.2 NC_006146.1 + 10102 0.67 0.616794
Target:  5'- gAGgACCCCGGucgaGGCGUGGgucuCACCCu -3'
miRNA:   3'- gUCgUGGGGCCcca-CUGCACC----GUGGG- -5'
29115 3' -62.2 NC_006146.1 + 13628 0.67 0.645879
Target:  5'- --cCACCCUGGGGcUGACGaucaaGCGCCg -3'
miRNA:   3'- gucGUGGGGCCCC-ACUGCac---CGUGGg -5'
29115 3' -62.2 NC_006146.1 + 15318 0.7 0.45814
Target:  5'- aGGCcaGCCCCGGuGUGccccugGCG-GGCGCCCc -3'
miRNA:   3'- gUCG--UGGGGCCcCAC------UGCaCCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 16717 0.72 0.330947
Target:  5'- -cGaCGCCCCGGGGUGGauacUGUGG-ACCUa -3'
miRNA:   3'- guC-GUGGGGCCCCACU----GCACCgUGGG- -5'
29115 3' -62.2 NC_006146.1 + 18856 0.69 0.521413
Target:  5'- gGGCGCUgCCGGGGUGguggacguGCGggGGCcucaGCCCc -3'
miRNA:   3'- gUCGUGG-GGCCCCAC--------UGCa-CCG----UGGG- -5'
29115 3' -62.2 NC_006146.1 + 22386 0.74 0.268045
Target:  5'- gCAGCaugcucuccacccugGCCCCGGGGUccacCGUGGUgACCCa -3'
miRNA:   3'- -GUCG---------------UGGGGCCCCAcu--GCACCG-UGGG- -5'
29115 3' -62.2 NC_006146.1 + 24030 0.73 0.316995
Target:  5'- aGGCGucguCCCCcuggcGGGGUGACGcGGC-CCCg -3'
miRNA:   3'- gUCGU----GGGG-----CCCCACUGCaCCGuGGG- -5'
29115 3' -62.2 NC_006146.1 + 25876 0.66 0.665231
Target:  5'- -cGCugCCCGGGaacauUGugGUGGagaGCUCc -3'
miRNA:   3'- guCGugGGGCCCc----ACugCACCg--UGGG- -5'
29115 3' -62.2 NC_006146.1 + 27384 0.68 0.578187
Target:  5'- gCAGCAa-CCGGGGcacagacGCGUGGCAucacCCCg -3'
miRNA:   3'- -GUCGUggGGCCCCac-----UGCACCGU----GGG- -5'
29115 3' -62.2 NC_006146.1 + 29590 0.68 0.530742
Target:  5'- aCAGgACCCCGGGGgcucaGCcaGGCugaACCCg -3'
miRNA:   3'- -GUCgUGGGGCCCCac---UGcaCCG---UGGG- -5'
29115 3' -62.2 NC_006146.1 + 30129 0.67 0.645879
Target:  5'- gAGCGCCCCcaugcaggGGGGUgGGCaUGGCcacgcAUCCg -3'
miRNA:   3'- gUCGUGGGG--------CCCCA-CUGcACCG-----UGGG- -5'
29115 3' -62.2 NC_006146.1 + 31416 0.72 0.323915
Target:  5'- aGGCACCCCcccGGGUGcCGUGGagACCUu -3'
miRNA:   3'- gUCGUGGGGc--CCCACuGCACCg-UGGG- -5'
29115 3' -62.2 NC_006146.1 + 31750 0.72 0.345346
Target:  5'- aGGCGCCCCcccGGGG-GACG-GGaGCCCc -3'
miRNA:   3'- gUCGUGGGG---CCCCaCUGCaCCgUGGG- -5'
29115 3' -62.2 NC_006146.1 + 32353 0.67 0.636184
Target:  5'- -cGCACCUCGaGGUaGGauaGgggGGCACCCg -3'
miRNA:   3'- guCGUGGGGCcCCA-CUg--Ca--CCGUGGG- -5'
29115 3' -62.2 NC_006146.1 + 33139 0.67 0.616794
Target:  5'- -cGCugCCCcgcuccggguggGGGGUGGCccggcugGGCACCg -3'
miRNA:   3'- guCGugGGG------------CCCCACUGca-----CCGUGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.